HL_7ZPQ_065

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

7ZPQ|1|5|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_065 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.2006

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZPQ|1|5|C|1023
7ZPQ|1|5|G|1024
7ZPQ|1|5|A|1025
7ZPQ|1|5|A|1026
7ZPQ|1|5|A|1027
7ZPQ|1|5|U|1028
7ZPQ|1|5|G|1029

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AS

40S ribosomal protein S18-A

Chain BJ

RPL11B isoform 1