HL_7ZPQ_078

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_078 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.0882

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZPQ|1|5|G|1634
7ZPQ|1|5|G|1635
7ZPQ|1|5|U|1636
7ZPQ|1|5|A|1637
7ZPQ|1|5|A|1638
7ZPQ|1|5|C|1639

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BY

60S ribosomal protein L27-A

Chain Bf

60S ribosomal protein L34-A