HL_7ZPQ_085

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7ZPQ|1|5|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_085 not in the Motif Atlas

Geometric match to HL_5TBW_043

Geometric discrepancy: 0.099

The information below is about HL_5TBW_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7ZPQ|1|5|C|1923
7ZPQ|1|5|U|1924
7ZPQ|1|5|U|1925
7ZPQ|1|5|C|1926
7ZPQ|1|5|G|1927
7ZPQ|1|5|G|1928

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Bm

RPL41A isoform 1

Chain Bo

60S ribosomal protein L43-A