HL_7ZPQ_089

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

7ZPQ|1|5|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_089 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.0807

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZPQ|1|5|A|2164
7ZPQ|1|5|G|2165
7ZPQ|1|5|A|2166
7ZPQ|1|5|A|2167
7ZPQ|1|5|A|2168
7ZPQ|1|5|G|2169
7ZPQ|1|5|U|2170

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein L2-A

Chain BG

60S ribosomal protein L8-A

Chain BM

60S ribosomal protein L15-A