HL_7ZPQ_090

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_090 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.1046

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZPQ|1|5|A|2220
7ZPQ|1|5|G|2221
7ZPQ|1|5|A|2222
7ZPQ|1|5|A|2223
7ZPQ|1|5|A|2224
7ZPQ|1|5|U|2225

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain Bh

60S ribosomal protein L36-A

Chain Bn

60S ribosomal protein L42-A