HL_7ZPQ_093

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7ZPQ|1|5|A|2372, 7ZPQ|1|5|A|2373, 7ZPQ|1|5|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_093 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0526

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZPQ|1|5|G|2369
7ZPQ|1|5|G|2370
7ZPQ|1|5|G|2371
7ZPQ|1|5|A|2372
7ZPQ|1|5|A|2373
7ZPQ|1|5|C|2374
7ZPQ|1|5|G|2375
7ZPQ|1|5|G|2376
7ZPQ|1|5|G|2377
7ZPQ|1|5|C|2378

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain Bd

RPL32 isoform 1