HL_7ZPQ_095

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

7ZPQ|1|5|C|2539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_095 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2214

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7ZPQ|1|5|A|2535
7ZPQ|1|5|A|2536
7ZPQ|1|5|U|2537
7ZPQ|1|5|U|2538
7ZPQ|1|5|C|2539
7ZPQ|1|5|A|2540
7ZPQ|1|5|U|2541
7ZPQ|1|5|U|2542
7ZPQ|1|5|U|2543
7ZPQ|1|5|U|2544

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BG

60S ribosomal protein L8-A