HL_7ZPQ_102

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_102 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0629

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZPQ|1|5|U|2744
7ZPQ|1|5|G|2745
7ZPQ|1|5|A|2746
7ZPQ|1|5|A|2747
7ZPQ|1|5|A|2748
7ZPQ|1|5|G|2749

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BD

RPL5 isoform 1

Chain BS

60S ribosomal protein L21-A

Chain Bn

60S ribosomal protein L42-A