HL_7ZPQ_107

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_107 not in the Motif Atlas

Homologous match to HL_8C3A_065

Geometric discrepancy: 0.0634

The information below is about HL_8C3A_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZPQ|1|5|C|2963
7ZPQ|1|5|G|2964
7ZPQ|1|5|U|2965
7ZPQ|1|5|G|2966
7ZPQ|1|5|A|2967
7ZPQ|1|5|G|2968

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain BA

60S ribosomal protein L2-A