HL_7ZPQ_110

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7ZPQ|1|5|G|3116, 7ZPQ|1|5|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_110 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.057

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7ZPQ|1|5|C|3110
7ZPQ|1|5|U|3111
7ZPQ|1|5|G|3112
7ZPQ|1|5|A|3113
7ZPQ|1|5|A|3114
7ZPQ|1|5|C|3115
7ZPQ|1|5|G|3116
7ZPQ|1|5|C|3117
7ZPQ|1|5|C|3118
7ZPQ|1|5|U|3119
7ZPQ|1|5|C|3120
7ZPQ|1|5|U|3121
7ZPQ|1|5|A|3122
7ZPQ|1|5|A|3123
7ZPQ|1|5|G|3124

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BH

60S ribosomal protein L9-A

Chain BN

60S ribosomal protein L16-A

Chain Bl

60S ribosomal protein L40-A