HL_7ZPQ_115

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CCAAUGGUCACG

Length

12 nucleotides

Bulged bases

7ZPQ|1|6|U|16, 7ZPQ|1|6|G|17, 7ZPQ|1|6|G|18, 7ZPQ|1|6|U|19, 7ZPQ|1|6|C|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_115 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.3281

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

7ZPQ|1|6|C|12
7ZPQ|1|6|C|13
7ZPQ|1|6|A|14
7ZPQ|1|6|A|15
7ZPQ|1|6|U|16
7ZPQ|1|6|G|17
7ZPQ|1|6|G|18
7ZPQ|1|6|U|19
7ZPQ|1|6|C|20
7ZPQ|1|6|A|21
7ZPQ|1|6|C|22
7ZPQ|1|6|G|23

Current chains

Chain 6

tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BJ

RPL11B isoform 1

Chain Bn

60S ribosomal protein L42-A