HL_7ZPQ_122

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_122 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.3155

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7ZPQ|1|2|A|829
7ZPQ|1|2|U|830
7ZPQ|1|2|U|831
7ZPQ|1|2|U|832
7ZPQ|1|2|U|833
7ZPQ|1|2|G|834
7ZPQ|1|2|U|835
7ZPQ|1|2|U|836
7ZPQ|1|2|G|837
7ZPQ|1|2|G|838
7ZPQ|1|2|U|839
7ZPQ|1|2|U|840
7ZPQ|1|2|U|841
7ZPQ|1|2|C|842
7ZPQ|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S6-A

Chain AL

40S ribosomal protein S11-A