HL_7ZQ5_013

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

7ZQ5|1|b|G|329, 7ZQ5|1|b|A|330, 7ZQ5|1|b|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZQ5_013 not in the Motif Atlas

Geometric match to HL_7RQB_012

Geometric discrepancy: 0.0815

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

7ZQ5|1|b|G|327
7ZQ5|1|b|U|328
7ZQ5|1|b|G|329
7ZQ5|1|b|A|330
7ZQ5|1|b|C|331
7ZQ5|1|b|A|332
7ZQ5|1|b|G|333
7ZQ5|1|b|C|334
7ZQ5|1|b|C|335

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain u

50S ribosomal protein L24