7ZQ5 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ZQ5_072 | 1/a/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_7ZQ5_001 | 1/a/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_7ZQ5_002 | 1/a/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_7ZQ5_003 | 1/b/59:68 | No text annotation | geometric HL_5J7L_134 HL_35677.3 | |
| HL_7ZQ5_004 | 1/b/87:95 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_7ZQ5_005 | 1/b/123:128 | No text annotation | geometric HL_5J7L_136 HL_82710.2 | |
| HL_7ZQ5_006 | 1/b/137:142 | UNCG | geometric HL_4PDB_001 HL_34617.5 | |
| HL_7ZQ5_007 | 1/b/158:168 | No text annotation | geometric HL_5J7L_138 HL_68257.1 | |
| HL_7ZQ5_008 | 1/b/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_7ZQ5_009 | 1/b/225:230 | No text annotation | geometric HL_5J7L_140 HL_62934.1 | |
| HL_7ZQ5_010 | 1/b/246:252 | No text annotation | geometric HL_7RQB_008 NA | |
| HL_7ZQ5_011 | 1/b/305:312 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 HL_01609.3 | |
| HL_7ZQ5_012 | 1/b/319:323 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_7ZQ5_013 | 1/b/327:335 | T-loop with unstacked turn | geometric HL_7RQB_012 NA | |
| HL_7ZQ5_014 | 1/b/382:392 | No text annotation | geometric HL_5J7L_145 HL_91503.7 | |
| HL_7ZQ5_015 | 1/b/410:417 | Pseudoknot geometry | geometric HL_5J7L_146 HL_30680.3 | |
| HL_7ZQ5_016 | 1/b/462:467 | GNRA | geometric HL_7RQB_015 NA | |
| HL_7ZQ5_017 | 1/b/487:493 | GNRA | geometric HL_5J7L_148 HL_37824.7 | |
| HL_7ZQ5_018 | 1/b/544:549 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_7ZQ5_019 | 1/b/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.8 | |
| HL_7ZQ5_020 | 1/b/611:617 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_7ZQ5_021 | 1/b/629:634 | GNRA | geometric HL_5J7L_152 HL_37824.7 | |
| HL_7ZQ5_022 | 1/b/641:647 | GNRA | geometric HL_3D0U_003 HL_37824.7 | |
| HL_7ZQ5_023 | 1/b/712:719 | GNRA wlth tandem sheared | geometric HL_5J7L_154 HL_81538.2 | |
| HL_7ZQ5_024 | 1/b/744:753 | No text annotation | geometric HL_7A0S_022 HL_88205.2 | |
| HL_7ZQ5_025 | 1/b/779:785 | GNRA related | geometric HL_2NUE_001 HL_53890.2 | |
| HL_7ZQ5_026 | 1/b/826:831 | No text annotation | geometric HL_5J7L_157 HL_55195.3 | |
| HL_7ZQ5_073 | 1/b/880:897 | No text annotation | ||
| HL_7ZQ5_027 | 1/b/883:893 | No text annotation | ||
| HL_7ZQ5_028 | 1/b/955:962 | GNRA | geometric HL_4WF9_027 HL_37824.7 | |
| HL_7ZQ5_029 | 1/b/978:985 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7ZQ5_030 | 1/b/1063:1075 | No text annotation | geometric HL_4KR9_003 HL_70782.2 | |
| HL_7ZQ5_031 | 1/b/1090:1101 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7ZQ5_032 | 1/b/1170:1179 | No text annotation | ||
| HL_7ZQ5_033 | 1/b/1222:1227 | GNRA | geometric HL_5J7L_164 HL_37824.7 | |
| HL_7ZQ5_034 | 1/b/1281:1289 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_165 HL_28252.8 | |
| HL_7ZQ5_035 | 1/b/1324:1330 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_166 HL_57176.2 | |
| HL_7ZQ5_036 | 1/b/1363:1368 | GNRA | geometric HL_5J7L_167 HL_37824.7 | |
| HL_7ZQ5_037 | 1/b/1389:1398 | No text annotation | geometric HL_5J7L_168 HL_81545.2 | |
| HL_7ZQ5_038 | 1/b/1451:1459 | Mini UNCG | geometric HL_5SWD_005 HL_48778.2 | |
| HL_7ZQ5_039 | 1/b/1492:1498 | Pseudoknot geometry with 3' bulge | geometric HL_4V9F_035 HL_57176.2 | |
| HL_7ZQ5_040 | 1/b/1533:1538 | UNCG | geometric HL_3U4M_001 HL_34617.5 | |
| HL_7ZQ5_041 | 1/b/1565:1568 | No text annotation | geometric HL_7RQB_039 NA | |
| HL_7ZQ5_042 | 1/b/1612:1619 | No text annotation | geometric HL_7RQB_040 NA | |
| HL_7ZQ5_043 | 1/b/1630:1636 | GNRA | geometric HL_5J7L_174 HL_37824.7 | |
| HL_7ZQ5_044 | 1/b/1691:1696 | UNCG | geometric HL_4WF9_040 HL_34617.5 | |
| HL_7ZQ5_045 | 1/b/1728:1731 | Mini UNCG | geometric HL_5B2T_002 HL_48778.2 | |
| HL_7ZQ5_046 | 1/b/1752:1756 | No text annotation | geometric HL_5J7L_177 HL_80709.3 | |
| HL_7ZQ5_047 | 1/b/1777:1787 | No text annotation | geometric HL_7RQB_045 NA | |
| HL_7ZQ5_048 | 1/b/1806:1811 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_7ZQ5_049 | 1/b/1868:1873 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_7ZQ5_050 | 1/b/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_7ZQ5_051 | 1/b/1949:1957 | No text annotation | geometric HL_5J7L_182 HL_20167.2 | |
| HL_7ZQ5_052 | 1/b/2027:2036 | No text annotation | geometric HL_4WF9_047 HL_61996.2 | |
| HL_7ZQ5_074 | 1/b/2103:2186 | No text annotation | ||
| HL_7ZQ5_053 | 1/b/2121:2177 | No text annotation | ||
| HL_7ZQ5_054 | 1/b/2209:2215 | No text annotation | geometric HL_5J7L_185 HL_49922.4 | |
| HL_7ZQ5_055 | 1/b/2248:2256 | No text annotation | geometric HL_4WF9_049 HL_85367.2 | |
| HL_7ZQ5_056 | 1/b/2264:2276 | No text annotation | geometric HL_7RQB_054 NA | |
| HL_7ZQ5_057 | 1/b/2303:2313 | No text annotation | geometric HL_7RQB_055 NA | |
| HL_7ZQ5_058 | 1/b/2324:2331 | Pseudoknot geometry | geometric HL_5J7L_189 HL_93324.4 | |
| HL_7ZQ5_059 | 1/b/2356:2361 | GNRA | geometric HL_5J7L_190 HL_37824.7 | |
| HL_7ZQ5_060 | 1/b/2374:2379 | GNRA | geometric HL_5J7L_191 HL_37824.7 | |
| HL_7ZQ5_061 | 1/b/2404:2413 | No text annotation | geometric HL_5J7L_192 HL_53454.2 | |
| HL_7ZQ5_062 | 1/b/2471:2479 | No text annotation | geometric HL_4V9F_062 HL_32735.2 | |
| HL_7ZQ5_063 | 1/b/2528:2535 | No text annotation | geometric HL_5J7L_194 HL_31585.4 | |
| HL_7ZQ5_064 | 1/b/2551:2557 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_7ZQ5_065 | 1/b/2594:2599 | GNRA | geometric HL_4LFB_028 HL_37824.7 | |
| HL_7ZQ5_066 | 1/b/2658:2663 | GNRA | geometric HL_7RQB_016 NA | |
| HL_7ZQ5_067 | 1/b/2701:2706 | Ribsomal LSU H95 | geometric HL_5J7L_198 HL_65794.5 | |
| HL_7ZQ5_068 | 1/b/2745:2759 | No text annotation | geometric HL_5J7L_199 HL_74055.2 | |
| HL_7ZQ5_069 | 1/b/2796:2799 | No text annotation | geometric HL_5J7L_176 HL_32346.4 | |
| HL_7ZQ5_070 | 1/b/2819:2827 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
| HL_7ZQ5_071 | 1/b/2856:2861 | GNRA | geometric HL_5J7L_152 HL_37824.7 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ZQ5_001 | 1/a/17:18, 1/a/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.6 | |
| IL_7ZQ5_002 | 1/a/23:28, 1/a/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_7ZQ5_003 | 1/a/30:31, 1/a/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7ZQ5_004 | 1/a/34:38, 1/a/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 IL_58103.11 | |
| IL_7ZQ5_005 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_7ZQ5_006 | 1/b/24:30, 1/b/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_7ZQ5_007 | 1/b/36:37, 1/b/442:444 | Single bulged A | geometric IL_5J7L_246 IL_31462.6 | |
| IL_7ZQ5_008 | 1/b/43:44, 1/b/434:436 | Minor groove platform | geometric IL_5J7L_247 IL_51454.3 | |
| IL_7ZQ5_009 | 1/b/81:85, 1/b/97:105 | Kink-turn | homologous IL_8VTW_004 NA | |
| IL_7ZQ5_010 | 1/b/183:184, 1/b/212:214 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_7ZQ5_011 | 1/b/188:194, 1/b/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.10 | |
| IL_7ZQ5_012 | 1/b/239:245, 1/b/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 IL_26307.2 | |
| IL_7ZQ5_013 | 1/b/269:271, 1/b/366:370 | No text annotation | geometric IL_5J7L_252 IL_47972.1 | |
| IL_7ZQ5_014 | 1/b/274:281, 1/b/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_7ZQ5_015 | 1/b/293:295, 1/b/343:347 | No text annotation | geometric IL_4WF9_014 IL_69440.3 | |
| IL_7ZQ5_016 | 1/b/481:484, 1/b/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_7ZQ5_017 | 1/b/536:539, 1/b/554:557 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_7ZQ5_018 | 1/b/564:566, 1/b/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_7ZQ5_019 | 1/b/606:610, 1/b/618:622 | AAA cross-strand stack | geometric IL_5J7L_258 IL_66798.2 | |
| IL_7ZQ5_020 | 1/b/672:674, 1/b/806:808 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_87907.2 | |
| IL_7ZQ5_021 | 1/b/674:678, 1/b/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_7ZQ5_022 | 1/b/697:698, 1/b/763:765 | Single bulged A | geometric IL_5J7L_261 IL_31462.6 | |
| IL_7ZQ5_023 | 1/b/702:703, 1/b/728:730 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_7ZQ5_024 | 1/b/703:707, 1/b/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_7ZQ5_025 | 1/b/738:740, 1/b/757:758 | Major groove platform | geometric IL_5J7L_264 IL_48076.6 | |
| IL_7ZQ5_026 | 1/b/775:777, 1/b/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_7ZQ5_110 | 1/b/844:848, 1/b/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_7ZQ5_028 | 1/b/849:851, 1/b/926:929 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_7ZQ5_029 | 1/b/856:862, 1/b/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_7ZQ5_030 | 1/b/862:863, 1/b/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.13 | |
| IL_7ZQ5_031 | 1/b/864:868, 1/b/909:912 | C-loop | geometric IL_5J7L_272 IL_26222.2 | |
| IL_7ZQ5_032 | 1/b/870:872, 1/b/905:907 | Isolated non-canonical cWW pair | geometric IL_5J7L_273 IL_28037.2 | |
| IL_7ZQ5_033 | 1/b/875:879, 1/b/898:902 | No text annotation | geometric IL_4V88_390 NA | |
| IL_7ZQ5_034 | 1/b/880:881, 1/b/895:897 | No text annotation | ||
| IL_7ZQ5_035 | 1/b/994:996, 1/b/1159:1160 | Single bulged C | geometric IL_7RQB_035 NA | |
| IL_7ZQ5_036 | 1/b/998:1002, 1/b/1153:1157 | UAA/GAN | geometric IL_5J7L_277 IL_38507.2 | |
| IL_7ZQ5_037 | 1/b/1004:1011, 1/b/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_7ZQ5_038 | 1/b/1011:1013, 1/b/1149:1150 | Single bulged U | geometric IL_4WF9_038 IL_89505.4 | |
| IL_7ZQ5_039 | 1/b/1018:1024, 1/b/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_7ZQ5_040 | 1/b/1024:1030, 1/b/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_7ZQ5_041 | 1/b/1031:1034, 1/b/1121:1123 | Isolated non-canonical cWW pair | geometric IL_5J7L_282 IL_57744.1 | |
| IL_7ZQ5_042 | 1/b/1038:1041, 1/b/1114:1117 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 IL_85033.2 | |
| IL_7ZQ5_044 | 1/b/1059:1063, 1/b/1075:1079 | No text annotation | ||
| IL_7ZQ5_045 | 1/b/1196:1198, 1/b/1247:1250 | Isolated cWS basepair | geometric IL_5J7L_286 IL_42997.3 | |
| IL_7ZQ5_046 | 1/b/1202:1206, 1/b/1240:1243 | No text annotation | geometric IL_5J7L_287 IL_91920.1 | |
| IL_7ZQ5_047 | 1/b/1208:1215, 1/b/1234:1238 | Kink-turn | geometric IL_5J7L_288 IL_70923.9 | |
| IL_7ZQ5_048 | 1/b/1262:1269, 1/b/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_289 IL_04346.10 | |
| IL_7ZQ5_049 | 1/b/1310:1313, 1/b/1603:1604 | Major groove platform; stack outside cWW | geometric IL_7RQB_050 NA | |
| IL_7ZQ5_050 | 1/b/1319:1323, 1/b/1331:1333 | C-loop | geometric IL_5J7L_291 IL_63596.11 | |
| IL_7ZQ5_051 | 1/b/1351:1355, 1/b/1376:1380 | UAA/GAN | geometric IL_5J7L_292 IL_89021.2 | |
| IL_7ZQ5_052 | 1/b/1357:1361, 1/b/1370:1374 | tSH-tHW-tHS | geometric IL_5J7L_293 IL_17136.7 | |
| IL_7ZQ5_053 | 1/b/1415:1416, 1/b/1582:1587 | No text annotation | geometric IL_5J7L_294 IL_87211.1 | |
| IL_7ZQ5_054 | 1/b/1417:1421, 1/b/1577:1581 | UAA/GAN | geometric IL_5J7L_295 IL_38507.2 | |
| IL_7ZQ5_055 | 1/b/1432:1435, 1/b/1557:1561 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 IL_58112.2 | |
| IL_7ZQ5_056 | 1/b/1437:1440, 1/b/1551:1555 | tSH-tHW | geometric IL_5J7L_297 IL_99646.2 | |
| IL_7ZQ5_057 | 1/b/1450:1451, 1/b/1459:1461 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_7ZQ5_058 | 1/b/1468:1471, 1/b/1520:1524 | No text annotation | geometric IL_5J7L_299 IL_68574.4 | |
| IL_7ZQ5_059 | 1/b/1474:1478, 1/b/1513:1517 | tSH-tHW-tHS | geometric IL_5J7L_300 IL_38862.4 | |
| IL_7ZQ5_060 | 1/b/1481:1482, 1/b/1507:1510 | No text annotation | ||
| IL_7ZQ5_061 | 1/b/1489:1491, 1/b/1499:1500 | Single bulged A | geometric IL_5J7L_302 IL_31462.6 | |
| IL_7ZQ5_062 | 1/b/1526:1529, 1/b/1542:1546 | UAA/GAN variation | geometric IL_5J7L_303 IL_23774.1 | |
| IL_7ZQ5_063 | 1/b/1651:1656, 1/b/2004:2006 | No text annotation | geometric IL_5J7L_304 IL_12566.4 | |
| IL_7ZQ5_064 | 1/b/1663:1665, 1/b/1995:1997 | Isolated tWW turn | geometric IL_5J7L_305 IL_67095.2 | |
| IL_7ZQ5_065 | 1/b/1666:1669, 1/b/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_7ZQ5_111 | 1/b/1666:1674, 1/b/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_7ZQ5_066 | 1/b/1669:1674, 1/b/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 IL_76758.2 | |
| IL_7ZQ5_067 | 1/b/1686:1691, 1/b/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_7ZQ5_068 | 1/b/1712:1718, 1/b/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_5J7L_309 IL_88269.4 | |
| IL_7ZQ5_069 | 1/b/1720:1724, 1/b/1736:1740 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7ZQ5_070 | 1/b/1727:1728, 1/b/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_7ZQ5_071 | 1/b/1770:1771, 1/b/1980:1982 | Single bulged A | geometric IL_5J7L_312 IL_31462.6 | |
| IL_7ZQ5_072 | 1/b/1798:1804, 1/b/1813:1821 | Kink-turn related | geometric IL_5J7L_313 IL_17069.5 | |
| IL_7ZQ5_073 | 1/b/1837:1840, 1/b/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_5J7L_314 IL_95583.2 | |
| IL_7ZQ5_074 | 1/b/1841:1842, 1/b/1898:1901 | Major groove intercalation | geometric IL_5J7L_315 IL_82107.4 | |
| IL_7ZQ5_075 | 1/b/1846:1849, 1/b/1893:1894 | Major groove minor groove platform; mini C-loop | geometric IL_4PDB_002 IL_68140.4 | |
| IL_7ZQ5_112 | 1/b/1851:1860, 1/b/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_7ZQ5_076 | 1/b/1864:1867, 1/b/1874:1878 | UAA/GAN variation | geometric IL_5J7L_317 IL_77691.5 | |
| IL_7ZQ5_077 | 1/b/1933:1934, 1/b/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_7ZQ5_078 | 1/b/1934:1945, 1/b/1961:1964 | No text annotation | geometric IL_4V9F_071 IL_04332.3 | |
| IL_7ZQ5_079 | 1/b/2050:2052, 1/b/2617:2618 | Major groove platform | geometric IL_7RQB_078 NA | |
| IL_7ZQ5_080 | 1/b/2054:2056, 1/b/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_7ZQ5_081 | 1/b/2067:2069, 1/b/2442:2443 | Single bulged U | geometric IL_7RQB_080 NA | |
| IL_7ZQ5_082 | 1/b/2070:2071, 1/b/2438:2441 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_7ZQ5_083 | 1/b/2081:2083, 1/b/2236:2239 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 IL_85599.2 | |
| IL_7ZQ5_084 | 1/b/2085:2087, 1/b/2232:2234 | Isolated non-canonical cWW pair | geometric IL_5J7L_326 IL_28037.2 | |
| IL_7ZQ5_085 | 1/b/2103:2121, 1/b/2177:2186 | No text annotation | ||
| IL_7ZQ5_086 | 1/b/2202:2204, 1/b/2220:2221 | Single bulged U | geometric IL_5J7L_331 IL_89505.4 | |
| IL_7ZQ5_087 | 1/b/2297:2299, 1/b/2317:2321 | No text annotation | geometric IL_5J7L_332 IL_61476.2 | |
| IL_7ZQ5_088 | 1/b/2350:2353, 1/b/2364:2367 | Double sheared | geometric IL_5J7L_333 IL_09705.15 | |
| IL_7ZQ5_089 | 1/b/2401:2403, 1/b/2414:2415 | No text annotation | ||
| IL_7ZQ5_090 | 1/b/2454:2455, 1/b/2496:2498 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_7ZQ5_091 | 1/b/2457:2459, 1/b/2493:2494 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_7ZQ5_092 | 1/b/2459:2461, 1/b/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.2 | |
| IL_7ZQ5_093 | 1/b/2466:2470, 1/b/2480:2484 | Triple sheared | geometric IL_5J7L_338 IL_17948.2 | |
| IL_7ZQ5_094 | 1/b/2507:2508, 1/b/2580:2582 | Major groove platform | geometric IL_4V9F_086 IL_07039.3 | |
| IL_7ZQ5_095 | 1/b/2510:2512, 1/b/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_7ZQ5_096 | 1/b/2512:2513, 1/b/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_7ZQ5_097 | 1/b/2522:2523, 1/b/2540:2543 | Major groove platform with intercalation | geometric IL_5J7L_342 IL_02555.1 | |
| IL_7ZQ5_098 | 1/b/2591:2592, 1/b/2601:2603 | Single bulged A | geometric IL_2QUX_002 IL_31462.6 | |
| IL_7ZQ5_099 | 1/b/2636:2640, 1/b/2774:2782 | tSH-tHS-tHW | geometric IL_5J7L_345 IL_04638.3 | |
| IL_7ZQ5_100 | 1/b/2652:2658, 1/b/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_7ZQ5_101 | 1/b/2680:2684, 1/b/2725:2727 | C-loop | geometric IL_5J7L_347 IL_63596.11 | |
| IL_7ZQ5_102 | 1/b/2687:2691, 1/b/2718:2722 | No text annotation | geometric IL_5J7L_348 IL_23774.1 | |
| IL_7ZQ5_103 | 1/b/2695:2696, 1/b/2711:2714 | Multiple bulged bases | geometric IL_5J7L_349 IL_42626.2 | |
| IL_7ZQ5_104 | 1/b/2737:2742, 1/b/2762:2767 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_7ZQ5_105 | 1/b/2795:2796, 1/b/2799:2801 | Single bulged A | geometric IL_4WF9_022 IL_31462.6 | |
| IL_7ZQ5_106 | 1/b/2806:2811, 1/b/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_7ZQ5_107 | 1/b/2838:2839, 1/b/2878:2880 | Major groove intercalation | geometric IL_5J7L_352 IL_66635.5 | |
| IL_7ZQ5_108 | 1/b/2843:2846, 1/b/2870:2874 | Multiple bulged bases with non-canonical cWW | geometric IL_5J7L_353 IL_64231.5 | |
| IL_7ZQ5_109 | 1/b/2847:2852, 1/b/2865:2869 | tHS double platform | geometric IL_5J7L_354 IL_70411.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ZQ5_027 | No text annotation | ||
| IL_7ZQ5_043 | Kink-turn |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ZQ5_001 | 1/a/10:16, 1/a/68:70, 1/a/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_7ZQ5_002 | 1/b/30:31, 1/b/474:481, 1/b/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_7ZQ5_012 | 1/b/30:31, 1/b/474:484, 1/b/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_7ZQ5_013 | 1/b/32:35, 1/b/445:461, 1/b/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_7ZQ5_003 | 1/b/56:57, 1/b/70:76, 1/b/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_7ZQ5_004 | 1/b/683:689, 1/b/773:775, 1/b/791:794 | No text annotation | homologous J3_8VTW_001 NA | |
| J3_7ZQ5_005 | 1/b/698:700, 1/b/732:736, 1/b/760:763 | No text annotation | homologous J3_8VTW_002 NA | |
| J3_7ZQ5_014 | 1/b/1052:1059, 1/b/1079:1090, 1/b/1101:1107 | No text annotation | ||
| J3_7ZQ5_006 | 1/b/1298:1303, 1/b/1625:1627, 1/b/1639:1642 | No text annotation | homologous J3_8VTW_004 NA | |
| J3_7ZQ5_007 | 1/b/1306:1309, 1/b/1605:1611, 1/b/1620:1622 | No text annotation | homologous J3_8VTW_005 NA | |
| J3_7ZQ5_015 | 1/b/1344:1350, 1/b/1381:1385, 1/b/1402:1403 | No text annotation | homologous J3_7A0S_018 J3_31965.2 | |
| J3_7ZQ5_016 | 1/b/1424:1429, 1/b/1564:1565, 1/b/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_7ZQ5_008 | 1/b/2091:2093, 1/b/2196:2200, 1/b/2223:2228 | No text annotation | homologous J3_8VTW_006 NA | |
| J3_7ZQ5_017 | 1/b/2282:2284, 1/b/2384:2395, 1/b/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_7ZQ5_009 | 1/b/2295:2297, 1/b/2321:2323, 1/b/2332:2337 | No text annotation | homologous J3_8VTW_007 NA | |
| J3_7ZQ5_018 | 1/b/2295:2299, 1/b/2317:2323, 1/b/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_7ZQ5_019 | 1/b/2517:2520, 1/b/2545:2550, 1/b/2558:2567 | No text annotation | ||
| J3_7ZQ5_010 | 1/b/2789:2791, 1/b/2805:2806, 1/b/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_7ZQ5_011 | 1/b/2812:2815, 1/b/2831:2836, 1/b/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J4_7ZQ5_001 | 1/b/268:269, 1/b/370:375, 1/b/399:406, 1/b/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_7ZQ5_002 | 1/b/297:301, 1/b/316:319, 1/b/323:325, 1/b/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_7ZQ5_003 | 1/b/601:604, 1/b/624:628, 1/b/635:638, 1/b/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_7ZQ5_004 | 1/b/1270:1276, 1/b/1294:1295, 1/b/1645:1648, 1/b/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_7ZQ5_005 | 1/b/1310:1314, 1/b/1338:1343, 1/b/1404:1405, 1/b/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_7ZQ5_006 | 1/b/1313:1314, 1/b/1338:1343, 1/b/1404:1405, 1/b/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_7ZQ5_007 | 1/b/1444:1445, 1/b/1466:1467, 1/b/1525:1526, 1/b/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_7ZQ5_008 | 1/b/1772:1776, 1/b/1788:1792, 1/b/1827:1830, 1/b/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_7ZQ5_009 | 1/b/1833:1835, 1/b/1905:1906, 1/b/1924:1933, 1/b/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_7ZQ5_010 | 1/b/2285:2289, 1/b/2343:2347, 1/b/2370:2372, 1/b/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_7ZQ5_011 | 1/b/2643:2646, 1/b/2674:2676, 1/b/2731:2735, 1/b/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_7ZQ5_001 | 1/b/47:54, 1/b/116:121, 1/b/130:131, 1/b/148:150, 1/b/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_7ZQ5_002 | 1/b/531:533, 1/b/560:564, 1/b/577:579, 1/b/1261:1262, 1/b/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_7ZQ5_003 | 1/b/584:589, 1/b/668:671, 1/b/809:812, 1/b/1195:1196, 1/b/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_7ZQ5_004 | 1/b/1674:1682, 1/b/1706:1707, 1/b/1751:1752, 1/b/1756:1764, 1/b/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_7ZQ5_007 | 1/b/2057:2064, 1/b/2446:2454, 1/b/2498:2506, 1/b/2583:2588, 1/b/2606:2611 | No text annotation | ||
| J5_7ZQ5_006 | 1/b/2074:2077, 1/b/2243:2246, 1/b/2258:2259, 1/b/2281:2282, 1/b/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_7ZQ5_001 | 1/b/45:46, 1/b/179:183, 1/b/214:224, 1/b/231:235, 1/b/262:266, 1/b/426:433 | No text annotation | ||
| J6_7ZQ5_002 | 1/b/2074:2077, 1/b/2243:2246, 1/b/2258:2259, 1/b/2281:2284, 1/b/2384:2395, 1/b/2421:2435 | No text annotation | ||
| J7_7ZQ5_001 | 1/b/8:15, 1/b/525:531, 1/b/2018:2023, 1/b/2040:2043, 1/b/2625:2630, 1/b/2788:2789, 1/b/2894:2895 | No text annotation | ||
| J7_7ZQ5_002 | 1/b/817:822, 1/b/835:838, 1/b/940:946, 1/b/971:976, 1/b/987:991, 1/b/1163:1164, 1/b/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J5_7ZQ5_005 | No text annotation |
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