HL_7ZRS_105

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7ZRS|1|5|G|2899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZRS_105 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1338

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7ZRS|1|5|A|2898
7ZRS|1|5|G|2899
7ZRS|1|5|C|2900
7ZRS|1|5|A|2901
7ZRS|1|5|G|2902
7ZRS|1|5|A|2903
7ZRS|1|5|A|2904
7ZRS|1|5|U|2905

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BH

60S ribosomal protein L9-A

Chain Bl

60S ribosomal protein L40-A