HL_7ZRS_116

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCUUUCACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZRS_116 not in the Motif Atlas

Homologous match to HL_6UFM_002

Geometric discrepancy: 0.242

The information below is about HL_6UFM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

7ZRS|1|6|G|31
7ZRS|1|6|C|32
7ZRS|1|6|U|33
7ZRS|1|6|U|34
7ZRS|1|6|U|35
7ZRS|1|6|C|36
7ZRS|1|6|A|37
7ZRS|1|6|C|38
7ZRS|1|6|C|39

Current chains

Chain 6

tRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AO

40S ribosomal protein S14-B

Chain AQ

40S ribosomal protein S16-A