HL_7ZS5_054

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

7ZS5|1|1|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZS5_054 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.3172

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7ZS5|1|1|A|2535
7ZS5|1|1|A|2536
7ZS5|1|1|U|2537
7ZS5|1|1|U|2538
7ZS5|1|1|C|2539
7ZS5|1|1|A|2540
7ZS5|1|1|U|2541
7ZS5|1|1|U|2542
7ZS5|1|1|U|2543
7ZS5|1|1|U|2544

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BI

60S ribosomal protein L8-A