HL_7ZTA_047

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7ZTA|1|23S1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZTA_047 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1076

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7ZTA|1|23S1|G|410
7ZTA|1|23S1|G|411
7ZTA|1|23S1|A|412
7ZTA|1|23S1|C|413
7ZTA|1|23S1|C|414
7ZTA|1|23S1|A|415
7ZTA|1|23S1|U|416
7ZTA|1|23S1|C|417

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L151

50S ribosomal protein L15