RNA 3D Hub //

7ZTA Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7ZTA_1131/05S1/34:48No text annotation
homologous
HL_5J7L_215
HL_97756.2
HL_7ZTA_0011/05S1/38:44No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_7ZTA_0021/05S1/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_7ZTA_0031/16S1/12:22No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_7ZTA_0041/16S1/82:87No text annotation
HL_7ZTA_0051/16S1/158:163GNRA
homologous
HL_5J7L_003
HL_37824.8
HL_7ZTA_0061/16S1/186:191GNRA
homologous
HL_5J7L_004
HL_37824.8
HL_7ZTA_0071/16S1/207:212UNCG variation
geometric
HL_2NUE_001
HL_53890.2
HL_7ZTA_0081/16S1/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_7ZTA_0091/16S1/296:301GNRA
homologous
HL_5J7L_007
HL_37824.8
HL_7ZTA_0101/16S1/320:333No text annotation
homologous
HL_5J7L_008
HL_81205.3
HL_7ZTA_0111/16S1/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_7ZTA_0121/16S1/379:384GNRA
homologous
HL_5J7L_010
HL_37824.8
HL_7ZTA_0131/16S1/419:424UNCG
homologous
HL_4LFB_011
HL_34617.5
HL_7ZTA_0141/16S1/462:470GNRA wlth extra near cWW
homologous
HL_5J7L_012
HL_81538.2
HL_7ZTA_1141/16S1/522:527GNRA variation
homologous
HL_5J7L_205
HL_37824.8
HL_7ZTA_0161/16S1/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_10453.3
HL_7ZTA_0171/16S1/689:698No text annotation
homologous
HL_5J7L_015
HL_75293.5
HL_7ZTA_0181/16S1/726:731GNRA
homologous
HL_5J7L_016
HL_37824.8
HL_7ZTA_0191/16S1/786:796No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_7ZTA_0201/16S1/840:846No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_7ZTA_0211/16S1/862:867GNRA
homologous
HL_5J7L_019
HL_37824.8
HL_7ZTA_0221/16S1/897:902GNRA
homologous
HL_4LFB_020
HL_37824.8
HL_7ZTA_0231/16S1/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_7ZTA_0241/16S1/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.8
HL_7ZTA_0251/16S1/1028:1033UNCG
geometric
HL_6CK5_001
HL_34617.5
HL_7ZTA_0261/16S1/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.8
HL_7ZTA_0271/16S1/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_7ZTA_0281/16S1/1134:1140No text annotation
homologous
HL_4LFB_026
HL_87954.2
HL_7ZTA_0291/16S1/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.8
HL_7ZTA_0301/16S1/1265:1270GNRA
homologous
HL_5J7L_027
HL_37824.8
HL_7ZTA_0311/16S1/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
HL_02887.3
HL_7ZTA_0321/16S1/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_7ZTA_0331/16S1/1449:1454UNCG
homologous
HL_4LFB_031
HL_34617.5
HL_7ZTA_0341/16S1/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_7ZTA_0351/23S1/59:68No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_7ZTA_0361/23S1/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_7ZTA_0371/23S1/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_7ZTA_0381/23S1/137:142UNCG
geometric
HL_3IGI_008
HL_34617.5
HL_7ZTA_0391/23S1/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_7ZTA_0401/23S1/194:201No text annotation
geometric
HL_5J7L_139
HL_30068.2
HL_7ZTA_0411/23S1/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_7ZTA_0421/23S1/246:252No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_7ZTA_0431/23S1/305:312T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_01609.3
HL_7ZTA_0441/23S1/319:323No text annotation
homologous
HL_4WF9_011
HL_75660.5
HL_7ZTA_0451/23S1/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_7ZTA_0461/23S1/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_7ZTA_0471/23S1/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_7ZTA_0481/23S1/462:467GNRA
homologous
HL_4WF9_015
HL_37824.8
HL_7ZTA_0491/23S1/487:493GNRA
homologous
HL_5J7L_148
HL_37824.8
HL_7ZTA_0501/23S1/545:548Mini UNCG with extended bulge
homologous
HL_7A0S_017
HL_48778.2
HL_7ZTA_0511/23S1/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_28252.9
HL_7ZTA_0521/23S1/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_7ZTA_0531/23S1/629:634GNRA
homologous
HL_5J7L_152
HL_37824.8
HL_7ZTA_0541/23S1/641:647No text annotation
homologous
HL_5J7L_153
HL_13529.1
HL_7ZTA_0551/23S1/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_7ZTA_0561/23S1/744:753No text annotation
homologous
HL_5J7L_155
HL_88205.2
HL_7ZTA_0571/23S1/779:785No text annotation
homologous
HL_7RQB_024
NA
HL_7ZTA_0581/23S1/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_7ZTA_1201/23S1/884:892No text annotation
HL_7ZTA_1161/23S1/955:962GNRA
homologous
HL_5J7L_211
HL_37824.8
HL_7ZTA_0611/23S1/978:985No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_7ZTA_0621/23S1/1064:1074No text annotation
homologous
HL_5J7L_161
HL_19210.3
HL_7ZTA_0631/23S1/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_7ZTA_0641/23S1/1171:1178No text annotation
homologous
HL_5J7L_163
HL_13963.3
HL_7ZTA_0651/23S1/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.8
HL_7ZTA_0661/23S1/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.9
HL_7ZTA_0671/23S1/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_7ZTA_0681/23S1/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.8
HL_7ZTA_0691/23S1/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_7ZTA_0701/23S1/1451:1459Mini UNCG with extended bulge
geometric
HL_5J7L_169
HL_22622.1
HL_7ZTA_0711/23S1/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_7ZTA_0721/23S1/1533:1538UNCG
homologous
HL_5J7L_171
HL_34617.5
HL_7ZTA_0731/23S1/1565:1568No text annotation
homologous
HL_7RQB_039
NA
HL_7ZTA_0741/23S1/1612:1619No text annotation
homologous
HL_5J7L_173
HL_89567.2
HL_7ZTA_0751/23S1/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.8
HL_7ZTA_0761/23S1/1691:1696UNCG
homologous
HL_5J7L_175
HL_34617.5
HL_7ZTA_0771/23S1/1728:1731No text annotation
homologous
HL_5J7L_176
HL_32346.4
HL_7ZTA_0781/23S1/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_7ZTA_0791/23S1/1777:1787No text annotation
homologous
HL_5J7L_178
HL_01962.2
HL_7ZTA_0801/23S1/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_7ZTA_0811/23S1/1868:1873GNRA
geometric
HL_4W90_003
HL_37824.8
HL_7ZTA_0821/23S1/1910:1920No text annotation
homologous
HL_5J7L_181
HL_25847.2
HL_7ZTA_0831/23S1/1949:1957No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_7ZTA_0841/23S1/2027:2036No text annotation
homologous
HL_5J7L_183
HL_61996.3
HL_7ZTA_0851/23S1/2143:2148UNCG
homologous
HL_3U4M_001
HL_34617.5
HL_7ZTA_0861/23S1/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_7ZTA_0871/23S1/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_7ZTA_0881/23S1/2264:2276No text annotation
homologous
HL_5J7L_187
HL_91939.2
HL_7ZTA_1211/23S1/2304:2312No text annotation
homologous
HL_5J7L_219
HL_50860.2
HL_7ZTA_0901/23S1/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_7ZTA_0911/23S1/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.8
HL_7ZTA_0921/23S1/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.8
HL_7ZTA_0931/23S1/2404:2413No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_7ZTA_0941/23S1/2471:2479No text annotation
homologous
HL_4WF9_056
HL_32735.2
HL_7ZTA_0951/23S1/2528:2535GNRA variation
homologous
HL_5J7L_194
HL_31585.4
HL_7ZTA_0961/23S1/2551:2557No text annotation
homologous
HL_7RQB_062
NA
HL_7ZTA_0971/23S1/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.8
HL_7ZTA_0981/23S1/2658:2663GNRA
geometric
HL_1MZP_001
HL_37824.8
HL_7ZTA_0991/23S1/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_7ZTA_1001/23S1/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_7ZTA_1011/23S1/2796:2799No text annotation
geometric
HL_5TBW_068
NA
HL_7ZTA_1021/23S1/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_7ZTA_1031/23S1/2856:2861GNRA
homologous
HL_5J7L_202
HL_37824.8
HL_7ZTA_1041/ATR1/12:20No text annotation
homologous
HL_1U0B_001
HL_07480.2
HL_7ZTA_1171/ATR1/28:36tRNA anticodon loop
homologous
HL_5J8B_118
NA
HL_7ZTA_1181/ETR1/30:38tRNA anticodon loop
homologous
HL_1U0B_002
HL_06059.7
HL_7ZTA_1091/ETR1/52:83T-loop with 2 stacked bulged bases
homologous
HL_1FIR_003
HL_28252.9
HL_7ZTA_1191/PTR1/31:39tRNA anticodon loop
homologous
HL_1FIR_005
HL_06059.7
HL_7ZTA_1121/PTR1/53:61T-loop with 2 stacked bulged bases
homologous
HL_5L4O_003
NA

Problematic loops

#loop idProblemSequence
HL_7ZTA_015No text annotation
HL_7ZTA_115No text annotation
HL_7ZTA_059No text annotation
HL_7ZTA_060No text annotation
HL_7ZTA_089No text annotation
HL_7ZTA_105No text annotation
HL_7ZTA_106T-loop with 2 stacked bulged bases
HL_7ZTA_107No text annotation
HL_7ZTA_108No text annotation
HL_7ZTA_110No text annotation
HL_7ZTA_111No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7ZTA_0011/05S1/17:18,
1/05S1/65:67		Major groove intercalation
homologous
IL_5J7L_355
IL_31462.7
IL_7ZTA_0021/05S1/23:28,
1/05S1/56:60		No text annotation
homologous
IL_5J7L_356
IL_18472.4
IL_7ZTA_0031/05S1/30:31,
1/05S1/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_7ZTA_0041/05S1/34:38,
1/05S1/44:48		Symmetric double minor groove platform
homologous
IL_5J7L_358
IL_58103.11
IL_7ZTA_0051/05S1/71:79,
1/05S1/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6
IL_7ZTA_0061/16S1/30:32,
1/16S1/552:553		Single bulged G
homologous
IL_5J7L_001
IL_00225.14
IL_7ZTA_0071/16S1/44:45,
1/16S1/396:398		Single bulged A
homologous
IL_5J7L_002
IL_31462.7
IL_7ZTA_0081/16S1/47:52,
1/16S1/359:361		No text annotation
homologous
IL_5J7L_003
IL_14177.2
IL_7ZTA_0091/16S1/54:56,
1/16S1/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_7ZTA_0101/16S1/63:66,
1/16S1/103:104		Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.5
IL_7ZTA_0111/16S1/67:69,
1/16S1/99:102		Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_7ZTA_0121/16S1/70:73,
1/16S1/97:98		Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_7ZTA_0131/16S1/75:76,
1/16S1/93:95		Stack outside cWW
geometric
IL_6JQ5_001
IL_00225.14
IL_7ZTA_0141/16S1/128:131,
1/16S1/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_7ZTA_0151/16S1/132:136,
1/16S1/227:230		Minor groove platform related
homologous
IL_5J7L_010
IL_64231.5
IL_7ZTA_0161/16S1/144:146,
1/16S1/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_7ZTA_0171/16S1/147:153,
1/16S1/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_7ZTA_0181/16S1/203:207,
1/16S1/212:214		No text annotation
homologous
IL_5J7L_013
IL_66997.2
IL_7ZTA_0191/16S1/242:247,
1/16S1/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_7ZTA_0201/16S1/249:252,
1/16S1/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_7ZTA_0211/16S1/292:293,
1/16S1/304:308		C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_7ZTA_0221/16S1/367:369,
1/16S1/392:393		Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_7ZTA_0231/16S1/371:375,
1/16S1/389:390		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_7ZTA_0241/16S1/375:376,
1/16S1/387:389		Single bulged G
homologous
IL_5J7L_019
IL_00225.14
IL_7ZTA_0251/16S1/409:416,
1/16S1/427:433		No text annotation
homologous
IL_5J7L_020
IL_28026.3
IL_7ZTA_0261/16S1/440:442,
1/16S1/492:497		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_7ZTA_0271/16S1/446:450,
1/16S1/483:488		tSH-tHW-tWW
geometric
IL_5J7L_022
IL_88269.4
IL_7ZTA_0281/16S1/450:455,
1/16S1/477:483		No text annotation
homologous
IL_5J7L_023
IL_70801.1
IL_7ZTA_0291/16S1/504:511,
1/16S1/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_7ZTA_0301/16S1/515:521,
1/16S1/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_7ZTA_0311/16S1/569:575,
1/16S1/880:881		No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_7ZTA_0321/16S1/580:584,
1/16S1/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_7ZTA_0331/16S1/594:596,
1/16S1/644:645		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_7ZTA_0341/16S1/597:598,
1/16S1/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_7ZTA_0351/16S1/605:612,
1/16S1/628:633		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_7ZTA_0361/16S1/654:655,
1/16S1/751:754		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.7
IL_7ZTA_0371/16S1/659:660,
1/16S1/745:747		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_7ZTA_0381/16S1/662:666,
1/16S1/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_7ZTA_1851/16S1/673:677,
1/16S1/713:717		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_49751.4
IL_7ZTA_0401/16S1/684:688,
1/16S1/699:706		Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_7ZTA_0411/16S1/774:778,
1/16S1/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_7ZTA_0421/16S1/779:783,
1/16S1/799:803		tSH-tHW-tHS
homologous
IL_5J7L_037
IL_17136.7
IL_7ZTA_0431/16S1/887:894,
1/16S1/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_7ZTA_0441/16S1/922:923,
1/16S1/1393:1395		Single bulged A
homologous
IL_5J7L_039
IL_31462.7
IL_7ZTA_0451/16S1/925:927,
1/16S1/1390:1391		Single bulged G
homologous
IL_5J7L_040
IL_00225.14
IL_7ZTA_0461/16S1/933:935,
1/16S1/1380:1384		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_7ZTA_0471/16S1/953:954,
1/16S1/1226:1228		Minor groove platform
homologous
IL_4LFB_038
IL_51454.3
IL_7ZTA_0481/16S1/993:997,
1/16S1/1044:1045		Minor groove platform
geometric
IL_5J7L_043
IL_47078.3
IL_7ZTA_0491/16S1/998:999,
1/16S1/1041:1043		Single stack bend
homologous
IL_5J7L_044
IL_26793.1
IL_7ZTA_0501/16S1/1048:1050,
1/16S1/1208:1209		Single bulged U
homologous
IL_5J7L_046
IL_89505.4
IL_7ZTA_0521/16S1/1052:1056,
1/16S1/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_7ZTA_0531/16S1/1057:1058,
1/16S1/1199:1203		Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_7ZTA_0541/16S1/1060:1061,
1/16S1/1195:1197		Single bulged A
homologous
IL_5J7L_049
IL_31462.7
IL_7ZTA_0551/16S1/1061:1063,
1/16S1/1193:1195		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_28037.2
IL_7ZTA_0561/16S1/1124:1128,
1/16S1/1144:1149		No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_7ZTA_0571/16S1/1129:1132,
1/16S1/1142:1143		Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_7ZTA_0581/16S1/1158:1161,
1/16S1/1175:1181		No text annotation
geometric
IL_5J7L_053
IL_42032.1
IL_7ZTA_0591/16S1/1247:1253,
1/16S1/1284:1290		No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_7ZTA_0601/16S1/1255:1258,
1/16S1/1277:1282		180 degree turn
homologous
IL_5J7L_055
IL_11344.2
IL_7ZTA_0611/16S1/1259:1263,
1/16S1/1272:1276		Double sheared with non-canonical cWW
homologous
IL_5J7L_056
IL_17948.2
IL_7ZTA_0621/16S1/1303:1308,
1/16S1/1329:1334		No text annotation
homologous
IL_5J7L_057
IL_85536.2
IL_7ZTA_0631/16S1/1399:1401,
1/16S1/1501:1504		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_7ZTA_0641/16S1/1401:1404,
1/16S1/1497:1501		No text annotation
homologous
IL_4LFB_068
IL_65718.4
IL_7ZTA_1871/16S1/1405:1407,
1/16S1/1494:1496		Isolated non-canonical cWW pair
homologous
IL_5J7L_363
IL_87907.2
IL_7ZTA_1881/16S1/1407:1409,
1/16S1/1491:1494		No text annotation
homologous
IL_4LFB_070
IL_31531.3
IL_7ZTA_0661/16S1/1412:1414,
1/16S1/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_7ZTA_0671/16S1/1416:1419,
1/16S1/1481:1484		Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_7ZTA_0681/16S1/1430:1435,
1/16S1/1466:1470		Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_7ZTA_0691/16S1/1440:1442,
1/16S1/1460:1461		Single bulged A
homologous
IL_5J7L_064
IL_31462.7
IL_7ZTA_0701/16S1/1445:1448,
1/16S1/1455:1457		No text annotation
homologous
IL_5J7L_065
IL_31531.3
IL_7ZTA_0711/23S1/24:30,
1/23S1/510:516		Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
IL_04021.2
IL_7ZTA_0721/23S1/36:37,
1/23S1/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_7ZTA_0731/23S1/43:44,
1/23S1/434:436		Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_7ZTA_0741/23S1/81:85,
1/23S1/97:105		No text annotation
homologous
IL_5J7L_248
IL_37015.1
IL_7ZTA_0751/23S1/183:184,
1/23S1/212:214		Single stack bend
homologous
IL_4WF9_007
IL_90729.1
IL_7ZTA_0761/23S1/188:194,
1/23S1/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_7ZTA_0771/23S1/239:245,
1/23S1/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_7ZTA_0781/23S1/269:271,
1/23S1/366:370		No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_7ZTA_0791/23S1/274:281,
1/23S1/359:363		No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_7ZTA_0801/23S1/293:295,
1/23S1/343:347		No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_7ZTA_0811/23S1/481:484,
1/23S1/496:509		No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_7ZTA_0821/23S1/536:539,
1/23S1/554:557		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_7ZTA_0831/23S1/564:566,
1/23S1/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
IL_07785.1
IL_7ZTA_0841/23S1/606:610,
1/23S1/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_7ZTA_0851/23S1/672:674,
1/23S1/806:808		No text annotation
homologous
IL_7RQB_017
NA
IL_7ZTA_0861/23S1/674:678,
1/23S1/799:806		tHW-tHW cross-strand stack
geometric
IL_5J7L_260
IL_54041.2
IL_7ZTA_0871/23S1/697:698,
1/23S1/763:765		Single bulged A
homologous
IL_5J7L_261
IL_31462.7
IL_7ZTA_0881/23S1/702:703,
1/23S1/728:730		Single bulged G
geometric
IL_5J7L_262
IL_00225.14
IL_7ZTA_0891/23S1/703:707,
1/23S1/724:728		Triple sheared
homologous
IL_5J7L_263
IL_50730.2
IL_7ZTA_0901/23S1/738:740,
1/23S1/757:758		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_7ZTA_0911/23S1/775:777,
1/23S1/787:791		Multiple bulged bases
homologous
IL_5J7L_265
IL_06549.2
IL_7ZTA_0921/23S1/844:847,
1/23S1/933:934		90 degree turn
homologous
IL_5J7L_267
IL_90729.1
IL_7ZTA_1891/23S1/844:848,
1/23S1/930:934		No text annotation
geometric
IL_5J7L_399
IL_96236.1
IL_7ZTA_0931/23S1/847:848,
1/23S1/930:933		Stack outside cWW
geometric
IL_5J7L_268
IL_56987.1
IL_7ZTA_0941/23S1/850:851,
1/23S1/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_7ZTA_0951/23S1/856:862,
1/23S1/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_7ZTA_0961/23S1/862:863,
1/23S1/913:915		Single bulged G
geometric
IL_5J7L_271
IL_00225.14
IL_7ZTA_0971/23S1/864:868,
1/23S1/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
IL_26222.2
IL_7ZTA_0981/23S1/870:872,
1/23S1/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_7ZTA_0991/23S1/875:879,
1/23S1/898:902		Double sheared with non-canonical cWW
homologous
IL_5J7L_274
IL_17948.2
IL_7ZTA_1001/23S1/880:881,
1/23S1/895:897		No text annotation
IL_7ZTA_1011/23S1/994:996,
1/23S1/1159:1160		Single bulged C
homologous
IL_5J7L_276
IL_61258.15
IL_7ZTA_1021/23S1/998:1002,
1/23S1/1153:1157		UAA/GAN
homologous
IL_4WF9_036
IL_38507.2
IL_7ZTA_1031/23S1/1004:1011,
1/23S1/1150:1151		SSU/LSU pseudoknot
geometric
IL_5J7L_278
IL_41203.4
IL_7ZTA_1041/23S1/1011:1013,
1/23S1/1149:1150		Single bulged U
homologous
IL_4WF9_038
IL_89505.4
IL_7ZTA_1051/23S1/1018:1024,
1/23S1/1140:1144		Kink-turn related
homologous
IL_5J7L_280
IL_57188.5
IL_7ZTA_1061/23S1/1024:1030,
1/23S1/1124:1140		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_7ZTA_1071/23S1/1031:1034,
1/23S1/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_57744.1
IL_7ZTA_1081/23S1/1038:1041,
1/23S1/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_7ZTA_1091/23S1/1043:1051,
1/23S1/1108:1112		Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_7ZTA_1101/23S1/1059:1062,
1/23S1/1076:1079		No text annotation
homologous
IL_6PRV_001
IL_92446.2
IL_7ZTA_1111/23S1/1087:1091,
1/23S1/1100:1102		Major groove platform with extra cWW
geometric
IL_5D8H_003
IL_51387.3
IL_7ZTA_1121/23S1/1196:1198,
1/23S1/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
IL_42997.3
IL_7ZTA_1131/23S1/1202:1206,
1/23S1/1240:1243		No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_7ZTA_1141/23S1/1208:1215,
1/23S1/1234:1238		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_7ZTA_1151/23S1/1262:1269,
1/23S1/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_7ZTA_1161/23S1/1310:1313,
1/23S1/1603:1604		Major groove platform; stack outside cWW
homologous
IL_5J7L_290
IL_50694.7
IL_7ZTA_1171/23S1/1319:1323,
1/23S1/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_7ZTA_1181/23S1/1351:1355,
1/23S1/1376:1380		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_7ZTA_1191/23S1/1357:1361,
1/23S1/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_7ZTA_1201/23S1/1415:1416,
1/23S1/1582:1587		No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_7ZTA_1211/23S1/1417:1421,
1/23S1/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_7ZTA_1221/23S1/1432:1435,
1/23S1/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_7ZTA_1231/23S1/1437:1440,
1/23S1/1551:1555		tSH-tHW
homologous
IL_5J7L_297
IL_99646.2
IL_7ZTA_1241/23S1/1450:1451,
1/23S1/1459:1461		Single bulged U
homologous
IL_5J7L_298
IL_89505.4
IL_7ZTA_1251/23S1/1468:1471,
1/23S1/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_7ZTA_1261/23S1/1474:1478,
1/23S1/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_7ZTA_1271/23S1/1481:1482,
1/23S1/1507:1510		180 degree turn
homologous
IL_5J7L_301
IL_00881.1
IL_7ZTA_1281/23S1/1489:1491,
1/23S1/1499:1500		Single bulged A
homologous
IL_5J7L_302
IL_31462.7
IL_7ZTA_1291/23S1/1526:1529,
1/23S1/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_7ZTA_1301/23S1/1651:1656,
1/23S1/2004:2006		No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_7ZTA_1311/23S1/1663:1665,
1/23S1/1995:1997		Isolated tWW turn
homologous
IL_4WF9_063
IL_67095.2
IL_7ZTA_1321/23S1/1666:1669,
1/23S1/1993:1994		Major groove platform; stack outside cWW
geometric
IL_5J7L_306
IL_50694.7
IL_7ZTA_1901/23S1/1666:1674,
1/23S1/1990:1994		No text annotation
homologous
IL_5J7L_386
IL_22854.4
IL_7ZTA_1331/23S1/1669:1674,
1/23S1/1990:1993		Intercalated tWH
homologous
IL_5J7L_307
IL_76758.2
IL_7ZTA_1341/23S1/1686:1691,
1/23S1/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
IL_47346.2
IL_7ZTA_1351/23S1/1712:1718,
1/23S1/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_7ZTA_1361/23S1/1720:1724,
1/23S1/1736:1740		Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_7ZTA_1371/23S1/1727:1728,
1/23S1/1731:1733		Single bulged C
geometric
IL_5J7L_311
IL_61258.15
IL_7ZTA_1381/23S1/1770:1771,
1/23S1/1980:1982		Single bulged A
homologous
IL_5J7L_312
IL_31462.7
IL_7ZTA_1391/23S1/1798:1804,
1/23S1/1813:1821		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_7ZTA_1401/23S1/1837:1840,
1/23S1/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_7ZTA_1411/23S1/1841:1842,
1/23S1/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.5
IL_7ZTA_1421/23S1/1846:1849,
1/23S1/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
IL_68140.4
IL_7ZTA_1911/23S1/1851:1860,
1/23S1/1882:1891		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_7ZTA_1431/23S1/1864:1867,
1/23S1/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
IL_77691.5
IL_7ZTA_1441/23S1/1933:1934,
1/23S1/1964:1967		Bulged stacked bases
homologous
IL_5J7L_318
IL_22551.4
IL_7ZTA_1451/23S1/1934:1945,
1/23S1/1961:1964		No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_7ZTA_1461/23S1/2050:2052,
1/23S1/2617:2618		Major groove platform
homologous
IL_5J7L_320
IL_48076.6
IL_7ZTA_1471/23S1/2054:2056,
1/23S1/2612:2615		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_7ZTA_1921/23S1/2067:2069,
1/23S1/2442:2443		Single bulged U
homologous
IL_4WF9_080
IL_89505.4
IL_7ZTA_1501/23S1/2070:2071,
1/23S1/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_7ZTA_1511/23S1/2081:2083,
1/23S1/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_7ZTA_1521/23S1/2085:2087,
1/23S1/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_7ZTA_1531/23S1/2103:2105,
1/23S1/2184:2186		Isolated non-canonical cWW pair
geometric
IL_4JGN_004
NA
IL_7ZTA_1541/23S1/2108:2110,
1/23S1/2179:2181		Isolated non-canonical cWW pair
geometric
IL_4V88_424
NA
IL_7ZTA_1551/23S1/2110:2120,
1/23S1/2178:2179		No text annotation
homologous
IL_3U4M_002
IL_32056.1
IL_7ZTA_1561/23S1/2124:2127,
1/23S1/2161:2174		No text annotation
homologous
IL_3U4M_003
IL_75283.2
IL_7ZTA_1571/23S1/2129:2136,
1/23S1/2155:2159		Kink-turn
homologous
IL_3U4M_004
IL_70923.9
IL_7ZTA_1581/23S1/2202:2204,
1/23S1/2220:2221		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_7ZTA_1591/23S1/2297:2299,
1/23S1/2317:2321		No text annotation
homologous
IL_5J7L_332
IL_61476.2
IL_7ZTA_1601/23S1/2350:2353,
1/23S1/2364:2367		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_7ZTA_1611/23S1/2401:2403,
1/23S1/2414:2415		Single bulged U
homologous
IL_4WF9_088
IL_89505.4
IL_7ZTA_1931/23S1/2453:2454,
1/23S1/2498:2500		Single stack bend
homologous
IL_5J7L_391
IL_26793.1
IL_7ZTA_1941/23S1/2454:2455,
1/23S1/2496:2498		Major groove platform
homologous
IL_5J7L_392
IL_48076.6
IL_7ZTA_1951/23S1/2457:2459,
1/23S1/2493:2494		Major groove platform
homologous
IL_5J7L_393
IL_07039.3
IL_7ZTA_1641/23S1/2459:2461,
1/23S1/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
IL_51387.3
IL_7ZTA_1651/23S1/2466:2470,
1/23S1/2480:2484		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
IL_17948.2
IL_7ZTA_1961/23S1/2507:2508,
1/23S1/2580:2582		Major groove platform
homologous
IL_5J7L_394
IL_07039.3
IL_7ZTA_1671/23S1/2510:2512,
1/23S1/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
IL_07785.1
IL_7ZTA_1681/23S1/2512:2513,
1/23S1/2571:2574		No text annotation
homologous
IL_5J7L_341
IL_42626.2
IL_7ZTA_1691/23S1/2522:2523,
1/23S1/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_7ZTA_1711/23S1/2591:2592,
1/23S1/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_7ZTA_1721/23S1/2636:2640,
1/23S1/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_7ZTA_1731/23S1/2652:2658,
1/23S1/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_5J7L_346
IL_16458.4
IL_7ZTA_1741/23S1/2680:2684,
1/23S1/2725:2727		C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_7ZTA_1751/23S1/2687:2691,
1/23S1/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
IL_23774.1
IL_7ZTA_1761/23S1/2695:2696,
1/23S1/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_7ZTA_1771/23S1/2737:2742,
1/23S1/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_7ZTA_1781/23S1/2795:2796,
1/23S1/2799:2801		Single bulged A
geometric
IL_7RQB_019
NA
IL_7ZTA_1791/23S1/2806:2811,
1/23S1/2889:2892		No text annotation
homologous
IL_5J7L_351
IL_29471.1
IL_7ZTA_1801/23S1/2838:2839,
1/23S1/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_7ZTA_1811/23S1/2843:2846,
1/23S1/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_7ZTA_1821/23S1/2847:2852,
1/23S1/2865:2869		tHS double platform
homologous
IL_5J7L_354
IL_70411.2

Problematic loops

#loop idProblemSequence
IL_7ZTA_184Isolated cWH basepair
IL_7ZTA_039No text annotation
IL_7ZTA_051Isolated non-canonical cWW pair
IL_7ZTA_186No text annotation
IL_7ZTA_065No text annotation
IL_7ZTA_148No text annotation
IL_7ZTA_149Isolated non-canonical cWW pair
IL_7ZTA_162No text annotation
IL_7ZTA_163Major groove platform with extra pair
IL_7ZTA_166No text annotation
IL_7ZTA_170Tandem non-canonical cWW pairs
IL_7ZTA_183No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7ZTA_0011/05S1/10:16,
1/05S1/68:70,
1/05S1/106:110		No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_7ZTA_0021/16S1/46:47,
1/16S1/361:367,
1/16S1/393:395		No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_7ZTA_0271/16S1/46:52,
1/16S1/359:367,
1/16S1/393:395		No text annotation
homologous
J3_5J7L_050
J3_46317.4
J3_7ZTA_0031/16S1/586:588,
1/16S1/651:654,
1/16S1/754:755		No text annotation
homologous
J3_5J7L_002
J3_56052.5
J3_7ZTA_0281/16S1/586:588,
1/16S1/651:655,
1/16S1/751:755		No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_7ZTA_0041/16S1/672:673,
1/16S1/717:725,
1/16S1/732:734		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_7ZTA_0051/16S1/826:829,
1/16S1/857:861,
1/16S1/868:874		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_7ZTA_0291/16S1/936:939,
1/16S1/1344:1350,
1/16S1/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_7ZTA_0061/16S1/943:946,
1/16S1/1235:1237,
1/16S1/1337:1340		No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_7ZTA_0071/16S1/955:962,
1/16S1/973:984,
1/16S1/1221:1225		No text annotation
homologous
J3_5J7L_006
J3_83516.4
J3_7ZTA_0081/16S1/990:993,
1/16S1/1045:1047,
1/16S1/1210:1215		No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_7ZTA_0301/16S1/990:997,
1/16S1/1044:1047,
1/16S1/1210:1215		No text annotation
homologous
J3_5J7L_053
J3_76475.2
J3_7ZTA_0091/16S1/1003:1006,
1/16S1/1023:1028,
1/16S1/1033:1037		No text annotation
J3_7ZTA_0101/16S1/1063:1068,
1/16S1/1107:1113,
1/16S1/1187:1193		No text annotation
homologous
J3_5J7L_008
J3_08394.3
J3_7ZTA_0311/16S1/1073:1074,
1/16S1/1083:1086,
1/16S1/1099:1102		No text annotation
homologous
J3_4LFB_017
J3_79369.1
J3_7ZTA_0121/16S1/1116:1118,
1/16S1/1155:1158,
1/16S1/1181:1184		No text annotation
homologous
J3_5J7L_010
J3_82365.4
J3_7ZTA_0321/16S1/1116:1118,
1/16S1/1155:1161,
1/16S1/1175:1184		No text annotation
homologous
J3_5J7L_054
J3_17791.2
J3_7ZTA_0131/16S1/1237:1241,
1/16S1/1296:1303,
1/16S1/1334:1337		No text annotation
homologous
J3_5J7L_011
J3_37047.6
J3_7ZTA_0141/23S1/30:31,
1/23S1/474:481,
1/23S1/509:510		No text annotation
homologous
J3_7RQB_001
NA
J3_7ZTA_0331/23S1/30:31,
1/23S1/474:484,
1/23S1/496:510		No text annotation
homologous
J3_9DFE_002
J3_92134.2
J3_7ZTA_0341/23S1/32:35,
1/23S1/445:461,
1/23S1/468:473		No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_7ZTA_0151/23S1/56:57,
1/23S1/70:76,
1/23S1/110:114		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_7ZTA_0351/23S1/297:301,
1/23S1/316:325,
1/23S1/337:341		No text annotation
homologous
J3_5J7L_068
J3_46299.2
J3_7ZTA_0161/23S1/683:689,
1/23S1/773:775,
1/23S1/791:794		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_7ZTA_0171/23S1/698:700,
1/23S1/732:736,
1/23S1/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_7ZTA_0181/23S1/1055:1057,
1/23S1/1081:1087,
1/23S1/1102:1104		No text annotation
homologous
J3_6PRV_001
J3_28621.5
J3_7ZTA_0191/23S1/1298:1303,
1/23S1/1625:1627,
1/23S1/1639:1642		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_7ZTA_0201/23S1/1306:1309,
1/23S1/1605:1611,
1/23S1/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_71677.1
J3_7ZTA_0211/23S1/1344:1349,
1/23S1/1382:1385,
1/23S1/1402:1403		No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_7ZTA_0361/23S1/1424:1429,
1/23S1/1564:1565,
1/23S1/1568:1574		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_7ZTA_0221/23S1/2091:2093,
1/23S1/2196:2200,
1/23S1/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
J3_89368.5
J3_7ZTA_0371/23S1/2282:2284,
1/23S1/2384:2395,
1/23S1/2421:2427		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_7ZTA_0231/23S1/2295:2297,
1/23S1/2321:2323,
1/23S1/2332:2337		No text annotation
homologous
J3_5J7L_045
J3_61124.2
J3_7ZTA_0381/23S1/2295:2299,
1/23S1/2317:2323,
1/23S1/2332:2337		No text annotation
homologous
J3_5J7L_071
J3_44961.1
J3_7ZTA_0241/23S1/2517:2520,
1/23S1/2545:2547,
1/23S1/2561:2567		No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_7ZTA_0251/23S1/2789:2791,
1/23S1/2805:2806,
1/23S1/2892:2894		No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_7ZTA_0261/23S1/2812:2815,
1/23S1/2831:2836,
1/23S1/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J4_7ZTA_0011/16S1/115:122,
1/16S1/239:240,
1/16S1/286:289,
1/16S1/311:312		No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_7ZTA_0021/16S1/142:144,
1/16S1/178:184,
1/16S1/193:198,
1/16S1/219:221		No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_7ZTA_0031/16S1/575:577,
1/16S1/764:769,
1/16S1/810:821,
1/16S1/879:880		No text annotation
homologous
J4_5J7L_003
J4_61885.6
J4_7ZTA_0041/23S1/268:269,
1/23S1/370:375,
1/23S1/399:406,
1/23S1/421:424		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_7ZTA_0051/23S1/297:301,
1/23S1/316:319,
1/23S1/323:325,
1/23S1/337:341		No text annotation
homologous
J4_5J7L_019
J4_71729.5
J4_7ZTA_0061/23S1/601:604,
1/23S1/624:628,
1/23S1/635:638,
1/23S1/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_7ZTA_0071/23S1/1270:1276,
1/23S1/1294:1295,
1/23S1/1645:1648,
1/23S1/2009:2010		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_7ZTA_0081/23S1/1310:1314,
1/23S1/1338:1343,
1/23S1/1404:1405,
1/23S1/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_7ZTA_0091/23S1/1313:1314,
1/23S1/1338:1343,
1/23S1/1404:1405,
1/23S1/1597:1603		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_7ZTA_0101/23S1/1444:1445,
1/23S1/1466:1467,
1/23S1/1525:1526,
1/23S1/1546:1547		No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_7ZTA_0111/23S1/1772:1776,
1/23S1/1788:1792,
1/23S1/1827:1830,
1/23S1/1975:1979		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_7ZTA_0121/23S1/1833:1835,
1/23S1/1905:1906,
1/23S1/1924:1933,
1/23S1/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_7ZTA_0131/23S1/2285:2289,
1/23S1/2343:2347,
1/23S1/2370:2372,
1/23S1/2381:2383		No text annotation
homologous
J4_5J7L_027
J4_04930.6
J4_7ZTA_0141/23S1/2643:2646,
1/23S1/2674:2676,
1/23S1/2731:2735,
1/23S1/2769:2771		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J4_7ZTA_0151/ATR1/7:10,
1/ATR1/22:24,
1/ATR1/40:45,
1/ATR1/83:84		tRNA junction
homologous
J4_5HR6_001
J4_70449.29
J4_7ZTA_0161/PTR1/7:10,
1/PTR1/25:27,
1/PTR1/43:49,
1/PTR1/65:66		tRNA junction
homologous
J4_7EQJ_002
J4_70449.29
J5_7ZTA_0011/16S1/36:39,
1/16S1/403:406,
1/16S1/436:440,
1/16S1/497:500,
1/16S1/545:548		No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_7ZTA_0021/16S1/36:39,
1/16S1/403:406,
1/16S1/436:442,
1/16S1/492:500,
1/16S1/545:548		No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_7ZTA_0031/16S1/58:61,
1/16S1/106:113,
1/16S1/314:316,
1/16S1/337:339,
1/16S1/350:354		No text annotation
homologous
J5_5J7L_003
J5_59910.6
J5_7ZTA_0041/23S1/47:54,
1/23S1/116:121,
1/23S1/130:131,
1/23S1/148:150,
1/23S1/176:178		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_7ZTA_0051/23S1/531:533,
1/23S1/560:564,
1/23S1/577:579,
1/23S1/1261:1262,
1/23S1/2017:2018		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_7ZTA_0061/23S1/584:589,
1/23S1/668:671,
1/23S1/809:812,
1/23S1/1195:1196,
1/23S1/1250:1256		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_7ZTA_0071/23S1/1674:1682,
1/23S1/1706:1707,
1/23S1/1751:1752,
1/23S1/1756:1764,
1/23S1/1988:1990		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_7ZTA_0081/23S1/2057:2064,
1/23S1/2446:2453,
1/23S1/2500:2507,
1/23S1/2582:2588,
1/23S1/2606:2611		No text annotation
J5_7ZTA_0091/23S1/2074:2077,
1/23S1/2243:2246,
1/23S1/2258:2259,
1/23S1/2281:2282,
1/23S1/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J6_7ZTA_0011/23S1/45:46,
1/23S1/179:183,
1/23S1/214:224,
1/23S1/231:235,
1/23S1/262:266,
1/23S1/426:433		No text annotation
J6_7ZTA_0021/23S1/2074:2077,
1/23S1/2243:2246,
1/23S1/2258:2259,
1/23S1/2281:2284,
1/23S1/2384:2395,
1/23S1/2421:2435		No text annotation
J7_7ZTA_0011/23S1/8:15,
1/23S1/525:531,
1/23S1/2018:2023,
1/23S1/2040:2043,
1/23S1/2625:2630,
1/23S1/2788:2789,
1/23S1/2894:2895		No text annotation
J7_7ZTA_0021/23S1/817:822,
1/23S1/835:838,
1/23S1/940:946,
1/23S1/971:976,
1/23S1/987:991,
1/23S1/1163:1164,
1/23S1/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_7ZTA_011No text annotation

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