HL_7ZUW_017

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

7ZUW|1|2|C|709, 7ZUW|1|2|A|713, 7ZUW|1|2|G|714

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUW_017 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3481

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7ZUW|1|2|G|703
7ZUW|1|2|C|704
7ZUW|1|2|U|705
7ZUW|1|2|A|706
7ZUW|1|2|A|707
7ZUW|1|2|C|708
7ZUW|1|2|C|709
7ZUW|1|2|U|710
7ZUW|1|2|U|711
7ZUW|1|2|G|712
7ZUW|1|2|A|713
7ZUW|1|2|G|714
7ZUW|1|2|C|726
7ZUW|1|2|U|727
7ZUW|1|2|U|728
7ZUW|1|2|G|729
7ZUW|1|2|G|730
7ZUW|1|2|C|731
7ZUW|1|2|G|732
7ZUW|1|2|A|733
7ZUW|1|2|A|734
7ZUW|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AG

40S ribosomal protein S6-A