7ZUW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ZUW_001 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_7ZUW_002 | 1/2/70:81 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_7ZUW_003 | 1/2/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_7ZUW_006 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_7ZUW_008 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_7ZUW_009 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_7ZUW_010 | 1/2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_7ZUW_011 | 1/2/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_7ZUW_012 | 1/2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_7ZUW_014 | 1/2/520:532 | No text annotation | homologous HL_4V88_199 NA | |
| HL_7ZUW_015 | 1/2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_7ZUW_018 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_7ZUW_019 | 1/2/777:783 | No text annotation | homologous HL_4V88_204 NA | |
| HL_7ZUW_121 | 1/2/829:843 | No text annotation | homologous HL_8P9A_236 HL_88364.3 | |
| HL_7ZUW_021 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_7ZUW_022 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_7ZUW_023 | 1/2/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_7ZUW_024 | 1/2/1055:1064 | No text annotation | ||
| HL_7ZUW_025 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_7ZUW_026 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_7ZUW_027 | 1/2/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_7ZUW_029 | 1/2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_7ZUW_030 | 1/2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_7ZUW_032 | 1/2/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_7ZUW_033 | 1/2/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_7ZUW_034 | 1/2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_7ZUW_035 | 1/2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_7ZUW_037 | 1/2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_7ZUW_118 | 1/3/47:56 | No text annotation | homologous HL_8P9A_186 HL_17803.1 | |
| HL_7ZUW_038 | 1/3/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_7ZUW_039 | 1/3/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_7ZUW_040 | 1/3/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_7ZUW_041 | 1/4/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_7ZUW_042 | 1/4/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7ZUW_043 | 1/5/38:45 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_7ZUW_044 | 1/5/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7ZUW_045 | 1/5/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_7ZUW_046 | 1/5/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_7ZUW_047 | 1/5/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7ZUW_048 | 1/5/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7ZUW_049 | 1/5/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7ZUW_050 | 1/5/278:287 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_7ZUW_051 | 1/5/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_7ZUW_052 | 1/5/357:362 | GNRA | homologous HL_5TBW_010 NA | |
| HL_7ZUW_053 | 1/5/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7ZUW_055 | 1/5/600:605 | GNRA | homologous HL_5TBW_013 NA | |
| HL_7ZUW_056 | 1/5/641:650 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7ZUW_057 | 1/5/687:695 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_7ZUW_058 | 1/5/708:713 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7ZUW_060 | 1/5/764:769 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_7ZUW_061 | 1/5/845:850 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7ZUW_062 | 1/5/877:886 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7ZUW_063 | 1/5/911:919 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_7ZUW_064 | 1/5/959:964 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7ZUW_066 | 1/5/1077:1084 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_7ZUW_067 | 1/5/1127:1133 | GNRA | homologous HL_5TBW_025 NA | |
| HL_7ZUW_068 | 1/5/1149:1156 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7ZUW_071 | 1/5/1348:1358 | No text annotation | homologous HL_5TBW_029 NA | |
| HL_7ZUW_072 | 1/5/1404:1409 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7ZUW_073 | 1/5/1463:1471 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7ZUW_074 | 1/5/1507:1513 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_7ZUW_075 | 1/5/1545:1550 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7ZUW_077 | 1/5/1600:1609 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7ZUW_078 | 1/5/1635:1640 | GNRA | homologous HL_5TBW_036 NA | |
| HL_7ZUW_079 | 1/5/1681:1689 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7ZUW_080 | 1/5/1720:1726 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_7ZUW_082 | 1/5/1793:1797 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7ZUW_083 | 1/5/1845:1852 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_7ZUW_084 | 1/5/1863:1869 | GNRA | homologous HL_5TBW_042 NA | |
| HL_7ZUW_085 | 1/5/1924:1929 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_7ZUW_087 | 1/5/2111:2115 | No text annotation | homologous HL_5TBW_045 NA | |
| HL_7ZUW_088 | 1/5/2136:2146 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7ZUW_089 | 1/5/2165:2171 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7ZUW_090 | 1/5/2221:2226 | GNRA | homologous HL_5TBW_048 NA | |
| HL_7ZUW_091 | 1/5/2254:2264 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7ZUW_092 | 1/5/2293:2301 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7ZUW_093 | 1/5/2370:2379 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7ZUW_097 | 1/5/2617:2625 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7ZUW_098 | 1/5/2634:2646 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_7ZUW_099 | 1/5/2674:2682 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7ZUW_100 | 1/5/2694:2701 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_7ZUW_101 | 1/5/2725:2733 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7ZUW_102 | 1/5/2745:2750 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7ZUW_103 | 1/5/2777:2785 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7ZUW_104 | 1/5/2841:2849 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_7ZUW_105 | 1/5/2898:2905 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_7ZUW_106 | 1/5/2921:2927 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_7ZUW_107 | 1/5/2964:2969 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7ZUW_108 | 1/5/3026:3031 | GNRA | geometric HL_7A0S_062 HL_34789.1 | |
| HL_7ZUW_109 | 1/5/3069:3074 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7ZUW_110 | 1/5/3111:3125 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7ZUW_111 | 1/5/3195:3198 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_7ZUW_112 | 1/5/3241:3248 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_7ZUW_113 | 1/5/3304:3312 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7ZUW_116 | 1/6/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ZUW_004 | No text annotation | ||
| HL_7ZUW_005 | No text annotation | ||
| HL_7ZUW_007 | No text annotation | ||
| HL_7ZUW_013 | No text annotation | ||
| HL_7ZUW_016 | No text annotation | ||
| HL_7ZUW_017 | No text annotation | ||
| HL_7ZUW_020 | Pseudoknot geometry | ||
| HL_7ZUW_028 | Anticodon loop related | ||
| HL_7ZUW_031 | No text annotation | ||
| HL_7ZUW_036 | No text annotation | ||
| HL_7ZUW_054 | No text annotation | ||
| HL_7ZUW_122 | No text annotation | ||
| HL_7ZUW_059 | GNRA | ||
| HL_7ZUW_065 | GNRA | ||
| HL_7ZUW_069 | No text annotation | ||
| HL_7ZUW_070 | GNRA wlth tandem sheared | ||
| HL_7ZUW_076 | No text annotation | ||
| HL_7ZUW_081 | UNCG variation | ||
| HL_7ZUW_119 | Mini UNCG | ||
| HL_7ZUW_086 | No text annotation | ||
| HL_7ZUW_094 | No text annotation | ||
| HL_7ZUW_095 | No text annotation | ||
| HL_7ZUW_096 | No text annotation | ||
| HL_7ZUW_120 | No text annotation | ||
| HL_7ZUW_114 | No text annotation | ||
| HL_7ZUW_115 | No text annotation | ||
| HL_7ZUW_117 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ZUW_234 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_8P9A_373 IL_05642.1 | |
| IL_7ZUW_002 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_7ZUW_003 | 1/2/37:41, 1/2/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_7ZUW_004 | 1/2/42:48, 1/2/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7ZUW_005 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_7ZUW_006 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_7ZUW_007 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_7ZUW_008 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_7ZUW_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_7ZUW_010 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_7ZUW_011 | 1/2/144:149, 1/2/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_00680.1 | |
| IL_7ZUW_248 | 1/2/150:152, 1/2/162:164 | No text annotation | homologous IL_8P9A_384 IL_23751.1 | |
| IL_7ZUW_013 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW | geometric IL_7RQB_022 NA | |
| IL_7ZUW_014 | 1/2/206:208, 1/2/257:259 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
| IL_7ZUW_015 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_7ZUW_016 | 1/2/270:273, 1/2/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_7ZUW_017 | 1/2/275:276, 1/2/279:281 | Single bulged U | homologous IL_4V88_401 NA | |
| IL_7ZUW_018 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_7ZUW_019 | 1/2/318:323, 1/2/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_7ZUW_020 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_7ZUW_021 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_7ZUW_022 | 1/2/411:413, 1/2/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_7ZUW_023 | 1/2/439:441, 1/2/463:464 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_7ZUW_024 | 1/2/443:447, 1/2/460:461 | C-loop | geometric IL_5J7L_018 NA | |
| IL_7ZUW_025 | 1/2/447:448, 1/2/458:460 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7ZUW_027 | 1/2/514:516, 1/2/536:543 | No text annotation | geometric IL_8VTW_081 NA | |
| IL_7ZUW_028 | 1/2/517:518, 1/2/533:535 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7ZUW_029 | 1/2/518:520, 1/2/532:533 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_7ZUW_030 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | geometric IL_6CZR_132 NA | |
| IL_7ZUW_031 | 1/2/557:559, 1/2/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_7ZUW_032 | 1/2/562:568, 1/2/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_7ZUW_033 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_7ZUW_034 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_7ZUW_035 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_7ZUW_037 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_7ZUW_038 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_7ZUW_039 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_7ZUW_040 | 1/2/817:822, 1/2/850:854 | No text annotation | homologous IL_8P9A_416 NA | |
| IL_7ZUW_041 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_7ZUW_236 | 1/2/868:870, 1/2/957:960 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_7ZUW_237 | 1/2/871:873, 1/2/954:956 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_01003.1 | |
| IL_7ZUW_044 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7ZUW_045 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_7ZUW_046 | 1/2/893:899, 1/2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_7ZUW_047 | 1/2/985:990, 1/2/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_7ZUW_048 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_7ZUW_049 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_7ZUW_050 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_7ZUW_051 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_7ZUW_052 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_7ZUW_053 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_7ZUW_054 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_7ZUW_055 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_7ZUW_056 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_7ZUW_057 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_7ZUW_058 | 1/2/1213:1215, 1/2/1448:1450 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_7ZUW_059 | 1/2/1224:1230, 1/2/1257:1259 | No text annotation | ||
| IL_7ZUW_238 | 1/2/1224:1233, 1/2/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_7ZUW_060 | 1/2/1230:1233, 1/2/1252:1257 | No text annotation | ||
| IL_7ZUW_061 | 1/2/1234:1236, 1/2/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_7ZUW_062 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_7ZUW_063 | 1/2/1272:1276, 1/2/1436:1438 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_7ZUW_239 | 1/2/1272:1278, 1/2/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_7ZUW_064 | 1/2/1276:1278, 1/2/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_7ZUW_065 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_7ZUW_066 | 1/2/1290:1292, 1/2/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_7ZUW_067 | 1/2/1306:1308, 1/2/1317:1318 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_7ZUW_069 | 1/2/1345:1348, 1/2/1377:1380 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_7ZUW_071 | 1/2/1389:1391, 1/2/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_7ZUW_072 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_7ZUW_073 | 1/2/1488:1494, 1/2/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_7ZUW_074 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_7ZUW_075 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation | geometric IL_4LFB_055 IL_57885.1 | |
| IL_7ZUW_076 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | geometric IL_4V88_463 NA | |
| IL_7ZUW_077 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_7ZUW_078 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_7ZUW_079 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | geometric IL_1DUQ_001 NA | |
| IL_7ZUW_080 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_7ZUW_081 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared | homologous IL_4V88_468 NA | |
| IL_7ZUW_082 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_7ZUW_083 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_7ZUW_084 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | homologous IL_4V88_471 NA | |
| IL_7ZUW_085 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_01003.1 | |
| IL_7ZUW_086 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_7ZUW_087 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7ZUW_090 | 1/3/13:19, 1/5/404:410 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_7ZUW_091 | 1/3/25:26, 1/5/337:339 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_7ZUW_092 | 1/3/44:64, 1/3/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7ZUW_093 | 1/3/64:66, 1/3/93:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_7ZUW_094 | 1/3/68:69, 1/3/89:91 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_7ZUW_095 | 1/3/144:145, 1/5/13:15 | Single bulged U | homologous IL_5TBW_003 NA | |
| IL_7ZUW_096 | 1/3/150:152, 1/5/7:8 | Single bulged C | homologous IL_5TBW_002 NA | |
| IL_7ZUW_097 | 1/4/15:16, 1/4/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7ZUW_098 | 1/4/21:27, 1/4/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7ZUW_099 | 1/4/28:29, 1/4/49:52 | Minor groove platform | homologous IL_5TBW_374 NA | |
| IL_7ZUW_100 | 1/4/29:30, 1/4/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_7ZUW_101 | 1/4/32:36, 1/4/41:45 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_7ZUW_102 | 1/4/72:80, 1/4/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7ZUW_103 | 1/4/84:87, 1/4/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7ZUW_104 | 1/5/27:28, 1/5/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7ZUW_105 | 1/5/31:38, 1/5/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_7ZUW_106 | 1/5/82:89, 1/5/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_7ZUW_107 | 1/5/123:124, 1/5/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7ZUW_108 | 1/5/125:127, 1/5/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7ZUW_249 | 1/5/163:165, 1/5/257:258 | Single stack bend | homologous IL_8P9A_238 IL_15011.1 | |
| IL_7ZUW_110 | 1/5/169:170, 1/5/248:253 | No text annotation | homologous IL_5TBW_010 NA | |
| IL_7ZUW_112 | 1/5/189:191, 1/5/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7ZUW_113 | 1/5/376:379, 1/5/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_7ZUW_114 | 1/5/429:431, 1/5/629:631 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_7ZUW_116 | 1/5/513:514, 1/5/578:580 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_7ZUW_117 | 1/5/518:526, 1/5/568:574 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_7ZUW_118 | 1/5/532:539, 1/5/554:562 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_7ZUW_119 | 1/5/669:671, 1/5/793:795 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7ZUW_120 | 1/5/681:685, 1/5/697:701 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_7ZUW_121 | 1/5/726:729, 1/5/742:746 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_7ZUW_122 | 1/5/753:754, 1/5/780:782 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7ZUW_123 | 1/5/756:757, 1/5/776:778 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_7ZUW_124 | 1/5/759:764, 1/5/769:774 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_7ZUW_125 | 1/5/804:806, 1/5/939:941 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_7ZUW_126 | 1/5/806:810, 1/5/932:939 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_7ZUW_127 | 1/5/834:835, 1/5/860:862 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_7ZUW_128 | 1/5/835:839, 1/5/856:860 | Triple sheared | geometric IL_5J7L_263 NA | |
| IL_7ZUW_129 | 1/5/870:873, 1/5/889:891 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7ZUW_130 | 1/5/874:876, 1/5/887:888 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7ZUW_131 | 1/5/908:910, 1/5/920:924 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7ZUW_132 | 1/5/955:957, 1/5/966:968 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7ZUW_250 | 1/5/970:971, 1/5/1112:1114 | Single stack bend | homologous IL_8CRE_038 NA | |
| IL_7ZUW_134 | 1/5/978:983, 1/5/1102:1105 | No text annotation | ||
| IL_7ZUW_135 | 1/5/984:986, 1/5/1100:1101 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7ZUW_136 | 1/5/992:998, 1/5/1053:1059 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5TBW_038 NA | |
| IL_7ZUW_137 | 1/5/998:999, 1/5/1051:1053 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_7ZUW_138 | 1/5/1000:1005, 1/5/1047:1050 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7ZUW_139 | 1/5/1007:1010, 1/5/1042:1045 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_7ZUW_140 | 1/5/1010:1012, 1/5/1040:1042 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7ZUW_142 | 1/5/1070:1072, 1/5/1088:1090 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_7ZUW_143 | 1/5/1075:1077, 1/5/1084:1085 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7ZUW_144 | 1/5/1121:1123, 1/5/1137:1139 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_7ZUW_145 | 1/5/1168:1172, 1/5/1329:1333 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7ZUW_146 | 1/5/1174:1181, 1/5/1326:1327 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_7ZUW_147 | 1/5/1181:1183, 1/5/1325:1326 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_7ZUW_148 | 1/5/1188:1195, 1/5/1315:1320 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7ZUW_149 | 1/5/1195:1206, 1/5/1300:1315 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7ZUW_150 | 1/5/1208:1210, 1/5/1297:1298 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7ZUW_151 | 1/5/1219:1229, 1/5/1282:1288 | No text annotation | ||
| IL_7ZUW_154 | 1/5/1377:1379, 1/5/1429:1432 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7ZUW_155 | 1/5/1386:1388, 1/5/1421:1422 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_7ZUW_156 | 1/5/1389:1396, 1/5/1416:1420 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7ZUW_157 | 1/5/1399:1401, 1/5/1412:1413 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_7ZUW_158 | 1/5/1445:1451, 1/5/2355:2360 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_7ZUW_244 | 1/5/1502:1506, 1/5/1514:1516 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_7ZUW_160 | 1/5/1533:1537, 1/5/1586:1591 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7ZUW_163 | 1/5/1619:1622, 1/5/1825:1827 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_7ZUW_164 | 1/5/1624:1627, 1/5/1818:1823 | Multiple bulged bases with near cWW | homologous IL_5TBW_065 NA | |
| IL_7ZUW_165 | 1/5/1628:1632, 1/5/1812:1817 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_7ZUW_166 | 1/5/1646:1650, 1/5/1807:1811 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_7ZUW_167 | 1/5/1662:1664, 1/5/1787:1789 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_7ZUW_168 | 1/5/1670:1671, 1/5/1779:1781 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_7ZUW_169 | 1/5/1671:1672, 1/5/1777:1779 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_7ZUW_170 | 1/5/1695:1699, 1/5/1748:1753 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7ZUW_171 | 1/5/1703:1708, 1/5/1738:1744 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_7ZUW_172 | 1/5/1712:1718, 1/5/1728:1734 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_7ZUW_173 | 1/5/1884:1890, 1/5/2347:2350 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_7ZUW_174 | 1/5/1896:1898, 1/5/2339:2341 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7ZUW_175 | 1/5/1899:1902, 1/5/2337:2338 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_7ZUW_245 | 1/5/1899:1907, 1/5/2334:2338 | No text annotation | homologous IL_8P9A_305 IL_80252.1 | |
| IL_7ZUW_176 | 1/5/1902:1907, 1/5/2334:2337 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_7ZUW_177 | 1/5/1919:1924, 1/5/1929:1935 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7ZUW_178 | 1/5/1941:1943, 1/5/2107:2109 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7ZUW_179 | 1/5/1948:1949, 1/5/2099:2102 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7ZUW_180 | 1/5/2129:2130, 1/5/2324:2326 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7ZUW_181 | 1/5/2157:2162, 1/5/2174:2181 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_7ZUW_182 | 1/5/2197:2200, 1/5/2246:2247 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_7ZUW_183 | 1/5/2201:2202, 1/5/2242:2245 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7ZUW_184 | 1/5/2205:2207, 1/5/2238:2239 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_7ZUW_185 | 1/5/2207:2211, 1/5/2236:2238 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_7ZUW_186 | 1/5/2212:2218, 1/5/2229:2235 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_7ZUW_187 | 1/5/2277:2278, 1/5/2308:2311 | Bulged stacked bases | homologous IL_5TBW_089 NA | |
| IL_7ZUW_188 | 1/5/2278:2289, 1/5/2305:2308 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_7ZUW_189 | 1/5/2392:2395, 1/5/2987:2989 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_7ZUW_190 | 1/5/2397:2399, 1/5/2982:2985 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7ZUW_191 | 1/5/2410:2412, 1/5/2812:2813 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7ZUW_192 | 1/5/2413:2414, 1/5/2808:2811 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7ZUW_193 | 1/5/2424:2426, 1/5/2605:2608 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7ZUW_195 | 1/5/2521:2527, 1/5/2585:2588 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7ZUW_196 | 1/5/2615:2616, 1/5/2626:2628 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_7ZUW_197 | 1/5/2667:2669, 1/5/2687:2691 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_7ZUW_198 | 1/5/2719:2722, 1/5/2736:2739 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_7ZUW_199 | 1/5/2771:2774, 1/5/2788:2789 | Single stack bend | homologous IL_8C3A_110 NA | |
| IL_7ZUW_200 | 1/5/2824:2825, 1/5/2866:2868 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_7ZUW_246 | 1/5/2824:2827, 1/5/2864:2868 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7ZUW_201 | 1/5/2825:2827, 1/5/2864:2866 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_7ZUW_202 | 1/5/2827:2829, 1/5/2863:2864 | Major groove platform | homologous IL_5TBW_104 NA | |
| IL_7ZUW_203 | 1/5/2829:2831, 1/5/2859:2863 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_7ZUW_204 | 1/5/2836:2840, 1/5/2850:2854 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7ZUW_205 | 1/5/2877:2878, 1/5/2950:2952 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_7ZUW_206 | 1/5/2880:2882, 1/5/2944:2948 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7ZUW_207 | 1/5/2882:2883, 1/5/2941:2944 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_7ZUW_208 | 1/5/2890:2892, 1/5/2913:2915 | Isolated non-canonical cWW pair | homologous IL_5TBW_110 NA | |
| IL_7ZUW_247 | 1/5/2890:2893, 1/5/2910:2915 | No text annotation | homologous IL_8P9A_338 IL_07469.3 | |
| IL_7ZUW_209 | 1/5/2892:2893, 1/5/2910:2913 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_7ZUW_210 | 1/5/2919:2921, 1/5/2927:2929 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_7ZUW_211 | 1/5/2961:2962, 1/5/2971:2973 | Single bulged A | geometric IL_2VPL_002 IL_14190.1 | |
| IL_7ZUW_212 | 1/5/3005:3008, 1/5/3140:3145 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7ZUW_213 | 1/5/3013:3015, 1/5/3041:3043 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7ZUW_214 | 1/5/3019:3026, 1/5/3031:3037 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_7ZUW_215 | 1/5/3048:3052, 1/5/3092:3095 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_7ZUW_216 | 1/5/3055:3060, 1/5/3085:3089 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_7ZUW_217 | 1/5/3064:3065, 1/5/3078:3081 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7ZUW_218 | 1/5/3104:3108, 1/5/3128:3132 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7ZUW_220 | 1/5/3169:3171, 1/5/3281:3283 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_7ZUW_221 | 1/5/3178:3180, 1/5/3211:3212 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_7ZUW_222 | 1/5/3180:3189, 1/5/3205:3211 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_7ZUW_223 | 1/5/3194:3195, 1/5/3198:3200 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_7ZUW_224 | 1/5/3226:3230, 1/5/3259:3261 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_7ZUW_226 | 1/5/3236:3239, 1/5/3250:3253 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_71194.1 | |
| IL_7ZUW_227 | 1/5/3301:3304, 1/5/3312:3315 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7ZUW_228 | 1/5/3319:3321, 1/5/3388:3389 | Single bulged U | geometric IL_5TBW_130 NA | |
| IL_7ZUW_229 | 1/5/3325:3326, 1/5/3382:3384 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_7ZUW_230 | 1/5/3329:3331, 1/5/3374:3379 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7ZUW_231 | 1/5/3333:3338, 1/5/3368:3372 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_7ZUW_232 | 1/5/3341:3343, 1/5/3364:3365 | Single bulged U | geometric IL_5TBW_134 NA | |
| IL_7ZUW_233 | 1/5/3343:3346, 1/5/3361:3364 | Double sheared; A in syn | homologous IL_8C3A_141 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ZUW_001 | Isolated non-canonical cWW pair | ||
| IL_7ZUW_012 | Tandem non-canonical cWW pairs | ||
| IL_7ZUW_026 | Single bulged A | ||
| IL_7ZUW_036 | Isolated non-canonical cWW pair | ||
| IL_7ZUW_235 | Isolated cWH basepair | ||
| IL_7ZUW_042 | Tandem non-canonical cWW pairs | ||
| IL_7ZUW_043 | Tandem non-canonical cWW pairs | ||
| IL_7ZUW_068 | Isolated non-canonical cWW pair | ||
| IL_7ZUW_240 | No text annotation | ||
| IL_7ZUW_070 | Isolated non-canonical cWW pair | ||
| IL_7ZUW_088 | Tandem non-canonical cWW pairs | ||
| IL_7ZUW_241 | No text annotation | ||
| IL_7ZUW_089 | Isolated non-canonical cWW pair | ||
| IL_7ZUW_109 | Other IL | ||
| IL_7ZUW_111 | Major groove platform | ||
| IL_7ZUW_115 | No text annotation | ||
| IL_7ZUW_133 | No text annotation | ||
| IL_7ZUW_141 | Other IL | ||
| IL_7ZUW_242 | Partly complementary | ||
| IL_7ZUW_243 | No text annotation | ||
| IL_7ZUW_152 | Single stack bend | ||
| IL_7ZUW_153 | No text annotation | ||
| IL_7ZUW_159 | No text annotation | ||
| IL_7ZUW_161 | Single stack bend | ||
| IL_7ZUW_162 | No text annotation | ||
| IL_7ZUW_194 | No text annotation | ||
| IL_7ZUW_219 | Isolated non-canonical cWW pair | ||
| IL_7ZUW_225 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ZUW_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_7ZUW_031 | 1/2/41:48, 1/2/431:439, 1/2/464:466 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_7ZUW_032 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_7ZUW_002 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_7ZUW_033 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_7ZUW_003 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_7ZUW_004 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_7ZUW_005 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_7ZUW_006 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_7ZUW_007 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_7ZUW_008 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_7ZUW_009 | 1/2/1215:1220, 1/2/1263:1267, 1/2/1442:1448 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_7ZUW_010 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_7ZUW_011 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation | geometric J3_4V88_082 NA | |
| J3_7ZUW_012 | 1/2/1336:1338, 1/2/1386:1389, 1/2/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_7ZUW_050 | 1/2/1336:1338, 1/2/1386:1391, 1/2/1407:1415 | No text annotation | homologous J3_8CRE_085 J3_88233.1 | |
| J3_7ZUW_013 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J3_7ZUW_014 | 1/3/19:20, 1/5/369:376, 1/5/403:404 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7ZUW_039 | 1/3/19:20, 1/5/369:379, 1/5/390:404 | No text annotation | geometric J3_5TBW_062 NA | |
| J3_7ZUW_040 | 1/3/21:24, 1/5/340:356, 1/5/363:368 | No text annotation | geometric J3_5TBW_061 NA | |
| J3_7ZUW_041 | 1/3/44:45, 1/3/58:64, 1/3/96:100 | No text annotation | homologous J3_8P9A_067 J3_01004.1 | |
| J3_7ZUW_015 | 1/4/9:14, 1/4/66:67, 1/4/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_7ZUW_016 | 1/5/113:123, 1/5/149:158, 1/5/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_7ZUW_043 | 1/5/113:124, 1/5/144:158, 1/5/263:267 | No text annotation | ||
| J3_7ZUW_044 | 1/5/185:189, 1/5/205:214, 1/5/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_7ZUW_017 | 1/5/503:504, 1/5/589:598, 1/5/607:612 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_7ZUW_018 | 1/5/815:821, 1/5/906:908, 1/5/924:927 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7ZUW_019 | 1/5/829:832, 1/5/864:868, 1/5/893:898 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_7ZUW_020 | 1/5/987:988, 1/5/1063:1067, 1/5/1093:1099 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_7ZUW_022 | 1/5/1480:1486, 1/5/1858:1860, 1/5/1872:1875 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7ZUW_023 | 1/5/1489:1492, 1/5/1838:1844, 1/5/1853:1855 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_7ZUW_024 | 1/5/1527:1532, 1/5/1592:1596, 1/5/1613:1614 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_7ZUW_045 | 1/5/1538:1543, 1/5/1552:1567, 1/5/1573:1585 | No text annotation | ||
| J3_7ZUW_025 | 1/5/1632:1633, 1/5/1642:1646, 1/5/1811:1812 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7ZUW_046 | 1/5/1655:1659, 1/5/1792:1793, 1/5/1797:1802 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_7ZUW_026 | 1/5/2433:2436, 1/5/2513:2518, 1/5/2591:2598 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_7ZUW_027 | 1/5/2530:2533, 1/5/2548:2564, 1/5/2579:2582 | No text annotation | geometric J3_8C3A_009 NA | |
| J3_7ZUW_048 | 1/5/2652:2654, 1/5/2755:2766, 1/5/2794:2799 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7ZUW_028 | 1/5/2665:2667, 1/5/2691:2693, 1/5/2702:2707 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_7ZUW_029 | 1/5/2887:2890, 1/5/2915:2917, 1/5/2931:2937 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7ZUW_049 | 1/5/3172:3177, 1/5/3213:3221, 1/5/3266:3280 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_7ZUW_030 | 1/5/3299:3301, 1/5/3315:3319, 1/5/3389:3391 | No text annotation | homologous J3_5TBW_015 NA | |
| J4_7ZUW_001 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_7ZUW_002 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_7ZUW_003 | 1/5/112:113, 1/5/267:272, 1/5/293:299, 1/5/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7ZUW_004 | 1/5/185:189, 1/5/205:208, 1/5/212:214, 1/5/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_7ZUW_005 | 1/5/1452:1458, 1/5/1476:1477, 1/5/1878:1881, 1/5/2353:2354 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_7ZUW_006 | 1/5/1493:1497, 1/5/1521:1526, 1/5/1615:1616, 1/5/1830:1837 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_7ZUW_007 | 1/5/1675:1676, 1/5/1694:1695, 1/5/1753:1754, 1/5/1773:1774 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_7ZUW_008 | 1/5/2131:2135, 1/5/2147:2151, 1/5/2187:2191, 1/5/2318:2323 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_7ZUW_009 | 1/5/2193:2195, 1/5/2249:2250, 1/5/2268:2277, 1/5/2311:2316 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7ZUW_010 | 1/5/2655:2659, 1/5/2713:2717, 1/5/2741:2743, 1/5/2752:2754 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_7ZUW_011 | 1/5/3011:3013, 1/5/3043:3044, 1/5/3099:3101, 1/5/3135:3137 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_7ZUW_012 | 1/6/7:10, 1/6/25:27, 1/6/43:49, 1/6/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_58311.1 | |
| J5_7ZUW_001 | 1/2/31:37, 1/2/471:479, 1/2/509:514, 1/2/543:546, 1/2/592:595 | No text annotation | ||
| J5_7ZUW_002 | 1/2/31:41, 1/2/466:479, 1/2/509:514, 1/2/543:546, 1/2/592:595 | No text annotation | ||
| J5_7ZUW_003 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7ZUW_004 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:265, 1/2/289:293 | No text annotation | ||
| J5_7ZUW_005 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:267, 1/2/288:293 | No text annotation | ||
| J5_7ZUW_013 | 1/2/636:641, 1/2/693:700, 1/2/738:744, 1/2/807:817, 1/2/854:860 | No text annotation | ||
| J5_7ZUW_007 | 1/3/35:42, 1/3/102:107, 1/3/115:116, 1/3/137:139, 1/5/20:22 | No text annotation | ||
| J5_7ZUW_008 | 1/5/659:664, 1/5/800:803, 1/5/942:945, 1/5/1376:1377, 1/5/1432:1438 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_7ZUW_009 | 1/5/676:679, 1/5/703:707, 1/5/714:722, 1/5/750:752, 1/5/783:788 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_7ZUW_010 | 1/5/1907:1915, 1/5/1939:1940, 1/5/2110:2111, 1/5/2115:2123, 1/5/2332:2334 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_7ZUW_011 | 1/5/2400:2407, 1/5/2816:2824, 1/5/2868:2877, 1/5/2952:2958, 1/5/2976:2981 | No text annotation | ||
| J5_7ZUW_012 | 1/5/2417:2420, 1/5/2612:2615, 1/5/2628:2629, 1/5/2651:2652, 1/5/2799:2805 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J6_7ZUW_001 | 1/3/32:35, 1/5/22:27, 1/5/58:68, 1/5/75:79, 1/5/106:110, 1/5/321:331 | No text annotation | ||
| J6_7ZUW_002 | 1/5/2417:2420, 1/5/2612:2615, 1/5/2628:2629, 1/5/2651:2654, 1/5/2755:2766, 1/5/2794:2805 | No text annotation | ||
| J7_7ZUW_001 | 1/5/950:955, 1/5/968:969, 1/5/1115:1118, 1/5/1142:1147, 1/5/1158:1162, 1/5/1339:1340, 1/5/1366:1371 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7ZUW_034 | No text annotation | ||
| J3_7ZUW_035 | No text annotation | ||
| J3_7ZUW_036 | No text annotation | ||
| J3_7ZUW_037 | No text annotation | ||
| J3_7ZUW_038 | No text annotation | ||
| J3_7ZUW_042 | No text annotation | ||
| J3_7ZUW_021 | No text annotation | ||
| J3_7ZUW_047 | No text annotation | ||
| J5_7ZUW_006 | No text annotation |
Coloring options: