HL_7ZUW_117

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUUCAAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUW_117 not in the Motif Atlas

Homologous match to HL_1QTQ_003

Geometric discrepancy: 0.1859

The information below is about HL_1QTQ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

7ZUW|1|6|G|53
7ZUW|1|6|U|54
7ZUW|1|6|U|55
7ZUW|1|6|C|56
7ZUW|1|6|A|57
7ZUW|1|6|A|58
7ZUW|1|6|G|59
7ZUW|1|6|U|60
7ZUW|1|6|C|61

Current chains

Chain 6

tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BJ

RPL11B isoform 1

Chain Bn

60S ribosomal protein L42-A