HL_7ZUW_121

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUW_121 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.3022

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7ZUW|1|2|A|829
7ZUW|1|2|U|830
7ZUW|1|2|U|831
7ZUW|1|2|U|832
7ZUW|1|2|U|833
7ZUW|1|2|G|834
7ZUW|1|2|U|835
7ZUW|1|2|U|836
7ZUW|1|2|G|837
7ZUW|1|2|G|838
7ZUW|1|2|U|839
7ZUW|1|2|U|840
7ZUW|1|2|U|841
7ZUW|1|2|C|842
7ZUW|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S6-A

Chain AL

40S ribosomal protein S11-A