HL_7ZUX_074

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7ZUX|1|5|G|1508, 7ZUX|1|5|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUX_074 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.0727

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7ZUX|1|5|A|1507
7ZUX|1|5|G|1508
7ZUX|1|5|C|1509
7ZUX|1|5|A|1510
7ZUX|1|5|G|1511
7ZUX|1|5|U|1512
7ZUX|1|5|U|1513

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain EO

60S ribosomal protein L17-A

Chain EQ

60S ribosomal protein L19-A

Chain Ek

60S ribosomal protein L39