3D structure

PDB id
7ZUX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Collided ribosome in a disome unit from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
CGGAAUUUG
Length
9 nucleotides
Bulged bases
7ZUX|1|5|G|2778
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZUX_103 not in the Motif Atlas
Homologous match to HL_8C3A_061
Geometric discrepancy: 0.1304
The information below is about HL_8C3A_061
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
26

Unit IDs

7ZUX|1|5|C|2777
7ZUX|1|5|G|2778
7ZUX|1|5|G|2779
7ZUX|1|5|A|2780
7ZUX|1|5|A|2781
7ZUX|1|5|U|2782
7ZUX|1|5|U|2783
7ZUX|1|5|U|2784
7ZUX|1|5|G|2785

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain EK
60S ribosomal protein L13-A
Chain EZ
60S ribosomal protein L28
Chain Eh
60S ribosomal protein L36-A
Chain En
60S ribosomal protein L42-A

Coloring options:


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