HL_7ZW0_014

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_014 not in the Motif Atlas

Geometric match to HL_4V88_200

Geometric discrepancy: 0.0736

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZW0|1|2|C|569
7ZW0|1|2|A|570
7ZW0|1|2|G|571
7ZW0|1|2|C|572
7ZW0|1|2|C|573
7ZW0|1|2|G|574

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sc

40S ribosomal protein S23-A

Chain sm

mRNA