HL_7ZW0_043

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

7ZW0|1|LA|G|218, 7ZW0|1|LA|A|219, 7ZW0|1|LA|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_043 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0398

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7ZW0|1|LA|G|216
7ZW0|1|LA|U|217
7ZW0|1|LA|G|218
7ZW0|1|LA|A|219
7ZW0|1|LA|G|220
7ZW0|1|LA|A|221
7ZW0|1|LA|A|222
7ZW0|1|LA|U|223
7ZW0|1|LA|C|224

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LD

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

60S ribosomal protein L4-A

Chain Lb

60S ribosomal protein L26-A