HL_7ZW0_050

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7ZW0|1|LA|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_050 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0719

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7ZW0|1|LA|U|640
7ZW0|1|LA|C|641
7ZW0|1|LA|U|642
7ZW0|1|LA|U|643
7ZW0|1|LA|G|644
7ZW0|1|LA|A|645
7ZW0|1|LA|A|646
7ZW0|1|LA|A|647
7ZW0|1|LA|C|648
7ZW0|1|LA|A|649

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LF

60S ribosomal protein L3

Chain Ld

60S ribosomal protein L28

Chain Lh

60S ribosomal protein L32