HL_7ZW0_115

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_115 not in the Motif Atlas

Geometric match to HL_5HR7_006

Geometric discrepancy: 0.1719

The information below is about HL_5HR7_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

7ZW0|1|sl|G|53
7ZW0|1|sl|U|54
7ZW0|1|sl|U|55
7ZW0|1|sl|C|56
7ZW0|1|sl|G|57
7ZW0|1|sl|A|58
7ZW0|1|sl|U|59
7ZW0|1|sl|U|60
7ZW0|1|sl|C|61

Current chains

Chain sl

tRNA

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LM

60S ribosomal protein L10