HL_8A3D_005

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8A3D|1|A|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_005 not in the Motif Atlas

Geometric match to HL_1P6V_004

Geometric discrepancy: 0.3685

The information below is about HL_1P6V_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8A3D|1|A|U|204
8A3D|1|A|C|205
8A3D|1|A|U|206
8A3D|1|A|G|207
8A3D|1|A|A|208
8A3D|1|A|U|209
8A3D|1|A|C|210
8A3D|1|A|G|211

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L4

Chain S

60S ribosomal protein L26

Chain Y

60S ribosomal protein L32