HL_8A3D_007

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8A3D|1|A|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1177

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8A3D|1|A|G|230
8A3D|1|A|U|231
8A3D|1|A|G|232
8A3D|1|A|U|233
8A3D|1|A|G|234
8A3D|1|A|A|235
8A3D|1|A|G|236
8A3D|1|A|G|237
8A3D|1|A|C|238

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain F

60S ribosomal protein L4

Chain S

60S ribosomal protein L26