HL_8A3D_042

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_042 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5096

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8A3D|1|A|G|2664
8A3D|1|A|U|2665
8A3D|1|A|U|2666
8A3D|1|A|C|2667
8A3D|1|A|G|2668
8A3D|1|A|C|2669
8A3D|1|A|C|2670

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L19

Chain j

60S ribosomal protein L37a