HL_8A3D_049

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

8A3D|1|A|G|3615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_049 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.1976

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8A3D|1|A|G|3614
8A3D|1|A|G|3615
8A3D|1|A|U|3616
8A3D|1|A|G|3617
8A3D|1|A|C|3618

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L19

Chain Q

60S ribosomal protein L24