HL_8A3D_052
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- A(A2M)GAAA(PSU)U
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A3D_052 not in the Motif Atlas
- Geometric match to HL_2IL9_007
- Geometric discrepancy: 0.3462
- The information below is about HL_2IL9_007
- Detailed Annotation
- GNRA with extra near cWW
- Broad Annotation
- GNRA with extra near cWW
- Motif group
- HL_82182.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
8A3D|1|A|A|3723
8A3D|1|A|A2M|3724
8A3D|1|A|G|3725
8A3D|1|A|A|3726
8A3D|1|A|A|3727
8A3D|1|A|A|3728
8A3D|1|A|PSU|3729
8A3D|1|A|U|3730
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain c
- 60S ribosomal protein L36
- Chain i
- 60S ribosomal protein L36a
Coloring options: