HL_8A3D_054

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8A3D|1|A|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_054 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.0791

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8A3D|1|A|U|3796
8A3D|1|A|C|3797
8A3D|1|A|U|3798
8A3D|1|A|A|3799
8A3D|1|A|A|3800
8A3D|1|A|U|3801
8A3D|1|A|U|3802
8A3D|1|A|A|3803
8A3D|1|A|G|3804

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L23