HL_8A3D_075

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

AGCGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_075 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2811

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8A3D|1|A|A|5019
8A3D|1|A|G|5020
8A3D|1|A|C|5021
8A3D|1|A|G|5028
8A3D|1|A|C|5029
8A3D|1|A|U|5030

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L22