HL_8A3D_078
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- CAGCUAGC(PSU)G
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A3D_078 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.2924
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8A3D|1|C|C|47
8A3D|1|C|A|48
8A3D|1|C|G|49
8A3D|1|C|C|50
8A3D|1|C|U|51
8A3D|1|C|A|52
8A3D|1|C|G|53
8A3D|1|C|C|54
8A3D|1|C|PSU|55
8A3D|1|C|G|56
Current chains
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- 60S ribosomal protein L23a
- Chain b
- Ribosomal protein uL29
- Chain d
- 60S ribosomal protein L37
- Chain f
- 60S ribosomal protein L39
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