HL_8A3D_079
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- G(PSU)GAAUU(OMG)CAGGACAUGAUC
- Length
- 20 nucleotides
- Bulged bases
- 8A3D|1|C|U|86
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A3D_079 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.4935
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8A3D|1|C|G|68
8A3D|1|C|PSU|69
8A3D|1|C|G|70
8A3D|1|C|A|71
8A3D|1|C|A|72
8A3D|1|C|U|73
8A3D|1|C|U|74
8A3D|1|C|OMG|75
8A3D|1|C|C|76
8A3D|1|C|A|77
8A3D|1|C|G|78
8A3D|1|C|G|79
8A3D|1|C|A|80
8A3D|1|C|C|81
8A3D|1|C|A|82
8A3D|1|C|U|86
8A3D|1|C|G|87
8A3D|1|C|A|88
8A3D|1|C|U|89
8A3D|1|C|C|90
Current chains
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 60S ribosomal protein L26
- Chain b
- Ribosomal protein uL29
- Chain d
- 60S ribosomal protein L37
- Chain f
- 60S ribosomal protein L39
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