HL_8A3L_008

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3L_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0888

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8A3L|1|A|A|320
8A3L|1|A|A|321
8A3L|1|A|C|322
8A3L|1|A|U|323
8A3L|1|A|G|324
8A3L|1|A|A|325
8A3L|1|A|G|326
8A3L|1|A|A|327
8A3L|1|A|C|328
8A3L|1|A|A|329
8A3L|1|A|C|330
8A3L|1|A|G|331
8A3L|1|A|G|332
8A3L|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20