HL_8A3L_047

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8A3L|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3L_047 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1061

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8A3L|1|a|C|305
8A3L|1|a|U|306
8A3L|1|a|G|307
8A3L|1|a|G|308
8A3L|1|a|A|309
8A3L|1|a|A|310
8A3L|1|a|A|311
8A3L|1|a|G|312

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L24