HL_8A3L_088

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

8A3L|1|a|A|2211, 8A3L|1|a|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3L_088 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.1324

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

8A3L|1|a|G|2209
8A3L|1|a|U|2210
8A3L|1|a|A|2211
8A3L|1|a|A|2212
8A3L|1|a|U|2213
8A3L|1|a|C|2214
8A3L|1|a|C|2215

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2