3D structure

PDB id
8A3L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into the binding of bS1 to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.42 Å

Loop

Sequence
UGACGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8A3L_093 not in the Motif Atlas
Homologous match to HL_5J7L_190
Geometric discrepancy: 0.0936
The information below is about HL_5J7L_190
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8A3L|1|a|U|2356
8A3L|1|a|G|2357
8A3L|1|a|A|2358
8A3L|1|a|C|2359
8A3L|1|a|G|2360
8A3L|1|a|G|2361

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain k
50S ribosomal protein L15
Chain v
50S ribosomal protein L27

Coloring options:


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