HL_8A3L_102

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8A3L|1|a|G|2751, 8A3L|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3L_102 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0792

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8A3L|1|a|C|2745
8A3L|1|a|U|2746
8A3L|1|a|G|2747
8A3L|1|a|A|2748
8A3L|1|a|A|2749
8A3L|1|a|A|2750
8A3L|1|a|G|2751
8A3L|1|a|C|2752
8A3L|1|a|A|2753
8A3L|1|a|U|2754
8A3L|1|a|C|2755
8A3L|1|a|U|2756
8A3L|1|a|A|2757
8A3L|1|a|A|2758
8A3L|1|a|G|2759

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain i

50S ribosomal protein L13