HL_8A3L_112

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

8A3L|1|a|U|958, 8A3L|1|a|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3L_112 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1959

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8A3L|1|a|PSU|955
8A3L|1|a|G|956
8A3L|1|a|C|957
8A3L|1|a|U|958
8A3L|1|a|A|959
8A3L|1|a|A|960
8A3L|1|a|C|961
8A3L|1|a|G|962

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16