HL_8A57_012
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUAACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8A57|1|A|A|372, 8A57|1|A|A|373, 8A57|1|A|C|374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A57_012 not in the Motif Atlas
- Geometric match to HL_5J7L_144
- Geometric discrepancy: 0.0908
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
8A57|1|A|G|370
8A57|1|A|U|371
8A57|1|A|A|372
8A57|1|A|A|373
8A57|1|A|C|374
8A57|1|A|A|375
8A57|1|A|G|376
8A57|1|A|C|377
8A57|1|A|C|378
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L4
- Chain X
- 50S ribosomal protein L24
Coloring options: