HL_8A57_019
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGGAAAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8A57|1|A|A|658
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A57_019 not in the Motif Atlas
- Geometric match to HL_5UD5_002
- Geometric discrepancy: 0.2077
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_87306.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8A57|1|A|C|654
8A57|1|A|G|655
8A57|1|A|G|656
8A57|1|A|A|657
8A57|1|A|A|658
8A57|1|A|A|659
8A57|1|A|A|660
8A57|1|A|A|661
8A57|1|A|G|662
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L4
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