HL_8A57_026

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCUUCUCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A57_026 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2681

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8A57|1|A|C|931
8A57|1|A|C|932
8A57|1|A|U|933
8A57|1|A|U|934
8A57|1|A|C|935
8A57|1|A|U|936
8A57|1|A|C|937
8A57|1|A|G|938
8A57|1|A|G|939

Current chains

Chain A

23S ribosomal RNA

Nearby chains