HL_8A57_040

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

8A57|1|A|A|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A57_040 not in the Motif Atlas

Geometric match to HL_1XJR_001

Geometric discrepancy: 0.0886

The information below is about HL_1XJR_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8A57|1|A|A|1679
8A57|1|A|G|1680
8A57|1|A|A|1681
8A57|1|A|G|1682
8A57|1|A|A|1683
8A57|1|A|A|1684
8A57|1|A|U|1685

Current chains

Chain A

23S ribosomal RNA

Nearby chains