HL_8A57_049

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8A57|1|A|A|2063, 8A57|1|A|A|2064, 8A57|1|A|G|2065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A57_049 not in the Motif Atlas

Geometric match to HL_7RQB_050

Geometric discrepancy: 0.1116

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

8A57|1|A|G|2060
8A57|1|A|U|2061
8A57|1|A|G|2062
8A57|1|A|A|2063
8A57|1|A|A|2064
8A57|1|A|G|2065
8A57|1|A|A|2066
8A57|1|A|U|2067
8A57|1|A|G|2068
8A57|1|A|C|2069

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32-2

Chain H

50S ribosomal protein L3