HL_8A57_066

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCUUCGGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A57_066 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3435

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8A57|1|A|U|2826
8A57|1|A|C|2827
8A57|1|A|U|2828
8A57|1|A|U|2829
8A57|1|A|C|2830
8A57|1|A|G|2831
8A57|1|A|G|2832
8A57|1|A|A|2833

Current chains

Chain A

23S ribosomal RNA

Nearby chains